API for mulea
Enrichment Analysis using Multiple Ontologies and False Discovery Rate
| Global functions | |
|---|---|
| MuleaHypergeometricTest | Man page |
| MuleaHypergeometricTest-class | Man page |
| SetBasedEnrichmentTest | Man page |
| SetBasedEnrichmentTest-class | Man page |
| SubramanianTest | Man page |
| SubramanianTest-class | Man page |
| addExtraParamsToPlt | Source code |
| checkIfPoolIncludeSample | Source code |
| computeSetBasedTestRes | Source code |
| cutGmtToPool | Source code |
| do_the_simulation | Source code |
| enrichment_test_simulation | Source code |
| fillOntologiesGrapgEdge | Source code |
| filterRelaxedResultsForPlotting | Source code |
| filter_ontology | Man page Source code |
| getOntologiesGraphEdgesTemplate | Source code |
| gsea | Man page |
| gsea-class | Man page |
| helper_set_up_namespace_params | Source code |
| initialize_result_df | Source code |
| list_to_gmt | Man page Source code |
| ora | Man page |
| ora-class | Man page |
| performSetBasedEnrichmentTest | Source code |
| performSetBasedEnrichmentTestElse | Source code |
| plot_barplot | Man page Source code |
| plot_graph | Man page Source code |
| plot_heatmap | Man page Source code |
| plot_lollipop | Man page Source code |
| read_gmt | Man page Source code |
| reshape_results | Man page Source code |
| run_test | Man page |
| run_test,MuleaHypergeometricTest-method | Man page |
| run_test,SetBasedEnrichmentTest-method | Man page |
| run_test,SubramanianTest-method | Man page |
| run_test,gsea-method | Man page |
| run_test,ora-method | Man page |
| set.based.enrichment.test | Source code |
| set.based.enrichment.test.wrapper | Source code |
| validate_column_names_and_function_args | Source code |
| write_gmt | Man page Source code |
