API for mulea
Enrichment Analysis using Multiple Ontologies and False Discovery Rate

Global functions
MuleaHypergeometricTest Man page
MuleaHypergeometricTest-class Man page
SetBasedEnrichmentTest Man page
SetBasedEnrichmentTest-class Man page
SubramanianTest Man page
SubramanianTest-class Man page
addExtraParamsToPlt Source code
checkIfPoolIncludeSample Source code
computeSetBasedTestRes Source code
cutGmtToPool Source code
do_the_simulation Source code
enrichment_test_simulation Source code
fillOntologiesGrapgEdge Source code
filterRelaxedResultsForPlotting Source code
filter_ontology Man page Source code
getOntologiesGraphEdgesTemplate Source code
gsea Man page
gsea-class Man page
helper_set_up_namespace_params Source code
initialize_result_df Source code
list_to_gmt Man page Source code
ora Man page
ora-class Man page
performSetBasedEnrichmentTest Source code
performSetBasedEnrichmentTestElse Source code
plot_barplot Man page Source code
plot_graph Man page Source code
plot_heatmap Man page Source code
plot_lollipop Man page Source code
read_gmt Man page Source code
reshape_results Man page Source code
run_test Man page
run_test,MuleaHypergeometricTest-method Man page
run_test,SetBasedEnrichmentTest-method Man page
run_test,SubramanianTest-method Man page
run_test,gsea-method Man page
run_test,ora-method Man page
set.based.enrichment.test Source code
set.based.enrichment.test.wrapper Source code
validate_column_names_and_function_args Source code
write_gmt Man page Source code
mulea documentation built on Sept. 30, 2024, 9:44 a.m.