SetBasedEnrichmentTest-class: PRIVATE class : An S4 class to represent a Hypergeometric...

In mulea: Enrichment Analysis using Multiple Ontologies and False Discovery Rate

PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea.

Description

PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea.

Usage

## S4 method for signature 'SetBasedEnrichmentTest'
run_test(model)

Arguments

model

Object of s4 class represents mulea Test.

Value

SetBasedEnrichmentTest object. Used as private function.

run_test method for SetBasedEnrichmentTest object. Used as private function.

Methods (by generic)

• run_test(SetBasedEnrichmentTest): runs test calculations.

Slots

gmt

A data.frame representing GMT's representation of model.

element_names

A data from experiment to analyse across model.

pool

A background data to count test.

nthreads

Number of processor's threads used in calculations.

random_seed

Setup seed for random generator.

mulea documentation built on Sept. 30, 2024, 9:44 a.m.