multic: Quantitative Linkage Analysis Tools using the Variance Components Approach

Calculate the polygenic and major gene models for quantitative trait linkage analysis using variance components approach. The 0.2.2 release includes bug fixes that allow 'multic' to run properly on 64-bit systems. The 0.3.0 release includes a fully implemented sw2mloci() function. As of 0.3.8, Splus version is no longer supported. Additional documentation and examples can be found in the inst directory.

AuthorEric Lunde, Mariza de Andrade, Beth Atkinson, Pat Votruba
Date of publication2016-01-29 11:18:30
MaintainerPat Votruba <votruba.patrick@mayo.edu>
LicenseGPL (>= 2) | file LICENSE
Version0.4.3.1

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Files in this package

multic
multic/inst
multic/inst/examples
multic/inst/examples/solarOutput
multic/inst/examples/solarOutput/simulated.ped
multic/inst/examples/solarOutput/phi2.gz
multic/inst/examples/solarOutput/solarMibds
multic/inst/examples/solarOutput/solarMibds/mibd.5.3.gz
multic/inst/examples/solarOutput/solarMibds/mibd.5.0.gz
multic/inst/examples/solarOutput/solarMibds/mibd.5.5.gz
multic/inst/examples/solarOutput/solarMibds/mibd.5.1.gz
multic/inst/examples/solarOutput/solarMibds/mibd.5.2.gz
multic/inst/examples/solarOutput/solarMibds/mibd.5.4.gz
multic/inst/examples/solarOutput/simulated.phen
multic/inst/examples/solarOutput/pedindex.cde
multic/inst/examples/solarOutput/pedindex.out
multic/inst/examples/swOutput
multic/inst/examples/swOutput/IBD-18.013.gz
multic/inst/examples/swOutput/IBD-18.011.gz
multic/inst/examples/swOutput/IBD-18.003.gz
multic/inst/examples/swOutput/IBD-18.008.gz
multic/inst/examples/swOutput/IBD-18.019.gz
multic/inst/examples/swOutput/c18.map
multic/inst/examples/swOutput/IBD-18.009.gz
multic/inst/examples/swOutput/IBD-18.015.gz
multic/inst/examples/swOutput/IBD-18.012.gz
multic/inst/examples/swOutput/IBD-18.004.gz
multic/inst/examples/swOutput/IBD-18.018.gz
multic/inst/examples/swOutput/IBD-18.002.gz
multic/inst/examples/swOutput/IBD-18.005.gz
multic/inst/examples/swOutput/IBD-18.017.gz
multic/inst/examples/swOutput/IBD-18.016.gz
multic/inst/examples/swOutput/IBD-18.010.gz
multic/inst/examples/swOutput/IBD-18.007.gz
multic/inst/examples/swOutput/IBD-18.006.gz
multic/inst/examples/swOutput/IBD-18.014.gz
multic/inst/examples/swOutput/IBD-18.001.gz
multic/inst/examples/calls.q
multic/inst/docs
multic/inst/docs/multicTechReport.pdf
multic/src
multic/src/Lib.h
multic/src/Makevars
multic/src/Rostream.h
multic/src/Least.h
multic/src/Calculate.cpp
multic/src/Maxfun_add.cpp
multic/src/loadVarSandwich.cpp
multic/src/Rstreambuf.cpp
multic/src/verS.h
multic/src/Composite.cpp
multic/src/sortIdPairs.cpp
multic/src/multicString.cpp
multic/src/loadEffects.cpp
multic/src/loadVMatrixFile.cpp
multic/src/Maxfun_source.cpp
multic/src/getShareOutOrder.cpp
multic/src/Estimator.h
multic/src/Calculate.h
multic/src/ReadFamilyData.h
multic/src/Maxfun.cpp
multic/src/loadInvExpSecDerRandom.cpp
multic/src/splitTempMloci.cpp
multic/src/TraitMarkerCov_par.h
multic/src/solar2mloci.cpp
multic/src/Robust_Variance.cpp
multic/src/fixibd.cpp
multic/src/extractLoci.cpp
multic/src/getFamilySizes.cpp
multic/src/Least.cpp
multic/src/Robust_Variance.h
multic/src/ReadFamilyData.cpp
multic/src/Likelihoodfun.h
multic/src/Maxfun_add.h
multic/src/Vector.cpp
multic/src/loadFamilyLogLikelihoods.cpp
multic/src/multic.cpp
multic/src/Likelihoodfun.cpp
multic/src/Maxfun_source.h
multic/src/Lib.cpp
multic/src/sw2mloci.cpp
multic/src/calculateCorrelations.cpp
multic/src/Maxfun_fun.h
multic/src/fullId.cpp
multic/src/isSpouse.cpp
multic/src/makeBlockIdPair.cpp
multic/src/Composite.h
multic/src/Rstreambuf.h
multic/src/getResidualPlacement.cpp
multic/src/multicString.h
multic/src/Maxfun.h
multic/src/InitValue_par.cpp
multic/src/InitValue_par.h
multic/src/ShrinkData.h
multic/src/validateShareOut.cpp
multic/src/Vector.h
multic/src/Model.cpp
multic/src/multic.h
multic/src/ShrinkData.cpp
multic/src/loadYBetaDiffFile.cpp
multic/src/Model.h
multic/src/TraitMarkerCov_par.cpp
multic/NAMESPACE
multic/R
multic/R/plot.multic.q
multic/R/print.multic.q
multic/R/load.inv.exp.sec.der.fixed.q
multic/R/subsets.q
multic/R/load.inv.exp.sec.der.random.q
multic/R/matplot.multic.q
multic/R/multic.utilities.q
multic/R/multic.q
multic/R/solar2multic.q
multic/R/load.effects.q
multic/R/fixibd.q
multic/R/get.max.lod.and.locus.q
multic/R/solar2mloci.q
multic/R/addGE.q
multic/R/mlociCut.q
multic/R/print.summary.multic.q
multic/R/add.heritability.q
multic/R/merlin2mloci.q
multic/R/fitted.multic.q
multic/R/herit.se.q
multic/R/load.residuals.q
multic/R/phi2share.q
multic/R/load.v.matrices.q
multic/R/summary.multic.q
multic/R/sw2mloci.q
multic/R/pchisq.mix.q
multic/R/gene.eff.q
multic/R/expand.multic.q
multic/R/zzz.q
multic/R/load.var.sandwich.q
multic/R/get.top.n.families.q
multic/R/t.rank.q
multic/R/load.y.beta.diffs.q
multic/R/residuals.multic.q
multic/R/plot.family.lods.q
multic/R/polygene.q
multic/MD5
multic/README
multic/DESCRIPTION
multic/man
multic/man/solar2mloci.Rd multic/man/subsets.Rd multic/man/multic.Rd multic/man/expand.data.Rd multic/man/sw2mloci.Rd multic/man/plot.multic.Rd multic/man/plot.family.lods.Rd multic/man/phi2share.Rd multic/man/solar2multic.Rd multic/man/multic.object.Rd multic/man/summary.multic.Rd multic/man/t.rank.Rd multic/man/non.user.level.objects.Rd multic/man/expand.multic.Rd multic/man/multic.control.Rd multic/man/addGE.Rd multic/man/print.multic.Rd
multic/LICENSE
multic/CHANGES

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