Description Usage Arguments Side Effects See Also Examples
phi2share
reads in the specified files
and generates a multic-formatted share.out file. share.out contains
unique identifiers, expected shared genetic material, and sibling,
spousal, and parent-offspring true/false values.
1 2 | phi2share(phi2, pedigree.file, pedindex.out, pedindex.cde,
output.directory=".")
|
phi2 |
a character value to specify the location of a SOLAR-formatted phi2
(or similarly formatted) file. Due to the general size of a typical
phi2 file, it is
often stored in .gz format. |
pedigree.file |
a character value to specify the location of a .ped (or
similarly formatted) file. This file must have a header of
|
pedindex.out |
a character value to specify the location of a pedindex.out file. This file must be the same that was output from SOLAR. It provides a mapping between the sequential number system assigned by SOLAR and the original family and individual identifiers. |
pedindex.cde |
a character value to specify the location of a pedindex.cde file. This file must be the same that was output from SOLAR. This file describes how pedindex.out is organized. This is necessary to read pedindex.out correctly. |
output.directory |
a character value specifying which directory to place the output
share.out. If |
phi2share
creates a local copy of,
gunzip's, and removes the copy of phi2
.
It also will overwrite share.out and share.out.gz
if they exist in output.directory
.
1 2 3 4 5 6 7 8 9 10 11 12 |
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