Description Arguments Generation Methods See Also
Object of class "multic"
returned from
the function multic
.
fam.log.liks |
the log likelihoods and lod scores for each family at each marker
(including the null hypothesis).
|
fixed.effects |
the estimate, standard error, t value, and p value of the fixed
effects for the traits and covariates for the null hypothesis and each
marker. |
polygenic |
the estimate, standard error, Wald score, Wald score P-value,
heritabilty estimate, standard error of the heritabilty
estimate, and heritably estimate P-value for the variance and
covariance of the polygenic effect of the formula
for the null hypothesis and each marker.
|
major.gene1 |
the estimate, standard error, Wald score, Wald score P-value,
heritabilty estimate, standard error of the heritabilty
estimate, and heritably estimate P-value for the variance and
covariance of the major gene effect of formula
for the null hypothesis and each marker.
|
environmental |
the estimate, standard error, Wald score, and Wald score P-value
for the variance and covariance of the environmental effect of formula
for the null hypothesis and each marker. environmental is
a 3-dimensional matrix. The first dimension is indexed by the letter
|
sibling.sibling |
the estimate, standard error, Wald score, and Wald score P-value
for the variance and covariance of the sibling to sibling effect of formula
for the null hypothesis and each marker.
|
parent.parent |
the estimate, standard error, Wald score, and Wald score P-value
for the variance and covariance of the parent to parent effect of formula
for the null hypothesis and each marker.
|
parent.offspring |
the estimate, standard error, Wald score, and Wald score P-value
for the variance and covariance of the parent to offspring effect of formula
for the null hypothesis and each marker.
|
log.liks |
the log likelihood, centimorgan distance, log likelihood status, and
lod score and P-value for the null hypothesis and each marker.
|
var.fixed |
the variance of the fixed effects of the traits and covariates for the
null hypothesis and each marker.
|
var.random |
the variance of the polygenic, major gene, and
environmental effects for the null hypothesis and each marker.
|
var.sandwich |
a more precise variance estimator after using a sandwich estimator
approach. This is only calculated if the multic object represents a
univariate model. |
cors |
the Pearson, Spearman, genetic, environmental, and phenotypic
correlations. |
v.matrices |
the variance-covariance matrix of the trait (y) that incorporates the
polygenic, major gene, shared common environment, and error matrices.
|
residuals |
the observed values minus the fitted values of the trait (y) divided by
the square root of the V matrix for each family. If the residuals are
not calculated, then |
descriptives |
the total individuals used, mean, standard deviation, minimum, maximum, kurtosis, and skewness for each trait and covariate. |
counts |
various counts of the total number of pedigrees, people, females,
males, and so on. This is mostly for passing data for
|
call |
how |
R.sq |
the proportion of variance due to the covariates. |
metadata |
a list of useful data like |
This class of objects is returned by the
multic
function to represent a fitted
variance components model.
Objects of this class have methods for the functions
polygene
,
print
,
plot
,
fitted
,
residuals
,
and summary
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