getdensityClosedSCR | R Documentation |
This function calculates posterior population density estimates from multimarkClosedSCR
output as D = N/A, where D is density, N is abundance, and A is the area of available habitat within the study area.
getdensityClosedSCR(out)
out |
List of output returned by |
An object of class mcmc.list
containing the following:
D |
Posterior samples for density. |
Brett T. McClintock
multimarkClosedSCR
# This example is excluded from testing to reduce package check time
# Example uses unrealistically low values for nchain, iter, and burnin
#Run behavior model for simulated data with constant detection probability (i.e., mod.p=~c)
sim.data<-simdataClosedSCR()
Enc.Mat<-sim.data$Enc.Mat
trapCoords<-sim.data$spatialInputs$trapCoords
studyArea<-sim.data$spatialInputs$studyArea
example.dot <- multimarkClosedSCR(Enc.Mat,trapCoords,studyArea,mod.p=~1)
#Calculate capture and recapture probabilities
D <- getdensityClosedSCR(example.dot)
summary(D)
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