A class of 'mulitmark' model inputs

`Enc.Mat`

Object of class

`"matrix"`

. The observed encounter histories (with rows corresponding to individuals and columns corresponding to sampling occasions).`data.type`

Object of class

`"character"`

. The encounter history data type ("never", "sometimes", or "always").`vAll.hists`

Object of class

`"integer"`

. An ordered vector containing all possible encounter histories in sequence.`Aprime`

Object of class

`"sparseMatrix"`

. Transpose of the A matrix mapping latent encounter histories to observed histories.`indBasis`

Object of class

`"numeric"`

.An ordered vector of the indices of the three encounter histories updated by each basis vector.`ncolbasis`

Object of class

`"integer"`

. The number of needed basis vectors.`knownx`

Object of class

`"integer"`

. Frequencies of known encounter histories.`C`

Object of class

`"integer"`

. Sampling occasion of first capture for each encounter history.`L`

Object of class

`"integer"`

. Sampling occasion of last capture for each encounter history.`naivex`

Object of class

`"integer"`

. “Naive” latent history frequencies assuming a one-to-one mapping with`Enc.Mat`

.`covs`

Object of class

`"data.frame"`

. Temporal covariates for detection probability (the number of rows in the data frame must equal the number of sampling occasions).

Objects can be created by calls of the form `processdata(Enc.Mat, ...)`

or `new("multimarksetup", ...)`

.

No methods defined with class "multimarksetup".

Brett T. McClintock

1 | ```
showClass("multimarksetup")
``` |

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