Description Slots Objects from the Class Methods Author(s) See Also Examples

A class of spatial 'mulitmark' model inputs

`Enc.Mat`

Object of class

`"matrix"`

. The observed encounter histories (with rows corresponding to individuals and columns corresponding to sampling occasions).`data.type`

Object of class

`"character"`

. The encounter history data type ("never", "sometimes", or "always").`vAll.hists`

Object of class

`"integer"`

. An ordered vector containing all possible encounter histories in sequence.`Aprime`

Object of class

`"sparseMatrix"`

. Transpose of the A matrix mapping latent encounter histories to observed histories.`indBasis`

Object of class

`"numeric"`

.An ordered vector of the indices of the three encounter histories updated by each basis vector.`ncolbasis`

Object of class

`"integer"`

. The number of needed basis vectors.`knownx`

Object of class

`"integer"`

. Frequencies of known encounter histories.`C`

Object of class

`"integer"`

. Sampling occasion of first capture for each encounter history.`L`

Object of class

`"integer"`

. Sampling occasion of last capture for each encounter history.`naivex`

Object of class

`"integer"`

. “Naive” latent history frequencies assuming a one-to-one mapping with`Enc.Mat`

.`covs`

Object of class

`"data.frame"`

. Temporal covariates for detection probability (the number of rows in the data frame must equal the number of sampling occasions).`spatialInputs`

Object of class

`"list"`

. List is of length 4 containing`trapCoords`

and`studyArea`

after re-scaling coordinates based on`maxscale`

, as well as the original (not re-scaled) grid cell resolution (`origCellRes`

) and re-scaling range (`Srange`

).

Objects can be created by calls of the form `processdata(Enc.Mat, ...)`

or `new("multimarkSCRsetup", ...)`

.

No methods defined with class "multimarkSCRsetup".

Brett T. McClintock

1 | ```
showClass("multimarkSCRsetup")
``` |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.