multiway-package: Component Models for Multi-Way Data

In multiway: Component Models for Multi-Way Data

Description

Fits multi-way component models via alternating least squares algorithms with optional constraints. Fit models include N-way Canonical Polyadic Decomposition, Individual Differences Scaling, Multiway Covariates Regression, Parallel Factor Analysis (1 and 2), Simultaneous Component Analysis, and Tucker Factor Analysis.

Details

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cpd computes the N-way Canonical Polyadic Decomposition of a tensor. indscal fits the Individual Differences Scaling model. mcr fits the Multiway Covariates Regression model. parafac fits the 3-way and 4-way Parallel Factor Analysis-1 model. parafac2 fits the 3-way and 4-way Parallel Factor Analysis-2 model. sca fits the four different Simultaneous Component Analysis models. tucker fits the 3-way and 4-way Tucker Factor Analysis model.

Author(s)

Nathaniel E. Helwig <[e-mail]>

Maintainer: Nathaniel E. Helwig <[e-mail]>

References

Bro, R., & De Jong, S. (1997). A fast non-negativity-constrained least squares algorithm. Journal of Chemometrics, 11, 393-401.

Bro, R., & Kiers, H.A.L. (2003). A new efficient method for determining the number of components in PARAFAC models. Journal of Chemometrics, 17, 274-286.

Carroll, J. D., & Chang, J-J. (1970). Analysis of individual differences in multidimensional scaling via an n-way generalization of "Eckart-Young" decomposition. Psychometrika, 35, 283-319.

Harshman, R. A. (1970). Foundations of the PARAFAC procedure: Models and conditions for an "explanatory" multimodal factor analysis. UCLA Working Papers in Phonetics, 16, 1-84.

Harshman, R. A. (1972). PARAFAC2: Mathematical and technical notes. UCLA Working Papers in Phonetics, 22, 30-44.

Harshman, R. A., & Lundy, M. E. (1994). PARAFAC: Parallel factor analysis. Computational Statistics and Data Analysis, 18, 39-72.

Haughwout, S. P., LaVallee, R. A., & Castle, I-J. P. (2015). Surveillance Report #102: Apparent Per Capita Alcohol Consumption: National, State, and Regional Trends, 1977-2013. Bethesda, MD: NIAAA, Alcohol Epidemiologic Data System.

Helwig, N. E. (2013). The special sign indeterminacy of the direct-fitting Parafac2 model: Some implications, cautions, and recommendations, for Simultaneous Component Analysis. Psychometrika, 78, 725-739.

Helwig, N. E. (2017). Estimating latent trends in multivariate longitudinal data via Parafac2 with functional and structural constraints. Biometrical Journal, 59(4), 783-803.

Helwig, N. E. (in prep). Constrained parallel factor analysis via the R package multiway.

Hitchcock, F. L. (1927). The expression of a tensor or a polyadic as a sum of products. Journal of Mathematics and Physics, 6, 164-189.

Kiers, H. A. L., ten Berge, J. M. F., & Bro, R. (1999). PARAFAC2-part I: A direct-fitting algorithm for the PARAFAC2 model. Journal of Chemometrics, 13, 275-294.

Kroonenberg, P. M., & de Leeuw, J. (1980). Principal component analysis of three-mode data by means of alternating least squares algorithms. Psychometrika, 45, 69-97.

Moore, E. H. (1920). On the reciprocal of the general algebraic matrix. Bulletin of the American Mathematical Society 26, 394-395.

Nephew, T. M., Yi, H., Williams, G. D., Stinson, F. S., & Dufour, M.C., (2004). U.S. Alcohol Epidemiologic Data Reference Manual, Vol. 1, 4th ed. U.S. Apparent Consumption of Alcoholic Beverages Based on State Sales, Taxation, or Receipt Data. Bethesda, MD: NIAAA, Alcohol Epidemiologic Data System. NIH Publication No. 04-5563.

Penrose, R. (1950). A generalized inverse for matrices. Mathematical Proceedings of the Cambridge Philosophical Society 51, 406-413.

Ramsay, J. O. (1988). Monotone regression splines in action. Statistical Science, 3, 425-441.

Smilde, A. K., & Kiers, H. A. L. (1999). Multiway covariates regression models. Journal of Chemometrics, 13, 31-48.

Timmerman, M. E., & Kiers, H. A. L. (2003). Four simultaneous component models for the analysis of multivariate time series from more than one subject to model intraindividual and interindividual differences. Psychometrika, 68, 105-121.

Tucker, L. R. (1966). Some mathematical notes on three-mode factor analysis. Psychometrika, 31, 279-311.

See Also

CMLS ~~

Examples

# See examples for... 
#   cpd (Canonical Polyadic Decomposition)
#   indscal (INividual Differences SCALing)
#   mcr (Multiway Covariates Regression)
#   parafac (Parallel Factor Analysis-1)
#   parafac2 (Parallel Factor Analysis-2)
#   sca (Simultaneous Component Analysis)
#   tucker (Tucker Factor Analysis)

Example output

Loading required package: CMLS
Loading required package: quadprog
Loading required package: parallel

multiway documentation built on May 2, 2019, 6:47 a.m.