omitMatrix: Compute TAI or TDI Profiles Omitting a Given Gene
In myTAI: Evolutionary Transcriptomics
Description
Usage
Arguments
Value
Author(s)
Examples
Description
For each gene i, exclude the corresponding gene i from the global
PhyloExpressionSet or DivergenceExpressionSet and compute the TAI or TDI
profile for the corresponding global PhyloExpressionSet or DivergenceExpressionSet
with excluded gene i.
This procedure results in a TAI or TDI profile Matrix storing the TAI or TDI profile for each omitted gene i.
Usage
1
omitMatrix(ExpressionSet)
Arguments
ExpressionSet
a standard PhyloExpressionSet or DivergenceExpressionSet object.
Value
a numeric matrix storing TAI or TDI profile for each omitted gene i.
Author(s)
Hajk-Georg Drost
Examples
1
2
3
4
5
6
7
8
9
# read standard phylotranscriptomics data
data(PhyloExpressionSetExample)
data(DivergenceExpressionSetExample)
# example PhyloExpressionSet
omMatrix_ps <- omitMatrix(PhyloExpressionSetExample)
# example DivergenceExpressionSet
omMatrix_ds <- omitMatrix(DivergenceExpressionSetExample)
myTAI documentation built on Feb. 24, 2021, 9:06 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
For each gene i, exclude the corresponding gene i from the global
PhyloExpressionSet or DivergenceExpressionSet and compute the TAI or TDI
profile for the corresponding global PhyloExpressionSet or DivergenceExpressionSet
with excluded gene i.
This procedure results in a TAI or TDI profile Matrix storing the TAI or TDI profile for each omitted gene i.
Usage
1 | omitMatrix(ExpressionSet)
|
Arguments
ExpressionSet |
a standard PhyloExpressionSet or DivergenceExpressionSet object. |
Value
a numeric matrix storing TAI or TDI profile for each omitted gene i.
Author(s)
Hajk-Georg Drost
Examples
1 2 3 4 5 6 7 8 9 | # read standard phylotranscriptomics data
data(PhyloExpressionSetExample)
data(DivergenceExpressionSetExample)
# example PhyloExpressionSet
omMatrix_ps <- omitMatrix(PhyloExpressionSetExample)
# example DivergenceExpressionSet
omMatrix_ds <- omitMatrix(DivergenceExpressionSetExample)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.