Files in myTAI
Evolutionary Transcriptomics Analyses

inst
inst/CITATION
inst/doc
inst/doc/Enrichment.R inst/doc/Intermediate.Rmd inst/doc/Introduction.Rmd inst/doc/Intermediate.R inst/doc/Taxonomy.Rmd
inst/doc/Intermediate.html
inst/doc/Expression.R
inst/doc/Advanced.html
inst/doc/Taxonomy.R inst/doc/Expression.Rmd inst/doc/Advanced.Rmd inst/doc/Advanced.R inst/doc/Introduction.R
inst/doc/Taxonomy.html
inst/doc/Expression.html
inst/doc/Enrichment.Rmd
inst/doc/Introduction.html
inst/doc/Enrichment.html
tests
tests/testthat.R
tests/testthat
tests/testthat/Rplots.pdf tests/testthat/test-CombinatorialSignificance.R tests/testthat/test-taxid.R tests/testthat/test-CollapseReplicates.R tests/testthat/test-taxonomy.R tests/testthat/test-ecScore.R tests/testthat/test-PlotPattern.R tests/testthat/test-PlotContribution.R tests/testthat/test-pTAI.R tests/testthat/test-pMatrix.R tests/testthat/test-RE.R tests/testthat/test-PlotEnrichment.R tests/testthat/test-EarlyConservationTest.R tests/testthat/test-TAI.R tests/testthat/test-FlatLineTest.R tests/testthat/test-PlotRE.R tests/testthat/test-bootMatrix.R tests/testthat/test-age.apply.R tests/testthat/test-PlotMeans.R tests/testthat/test-TDI.R tests/testthat/test-rhScore.R tests/testthat/test-pStrata.R tests/testthat/test-PlotBarRE.R tests/testthat/test-MatchMap.R tests/testthat/test-pTDI.R tests/testthat/test-DiffGenes.R tests/testthat/test-omitMatrix.R tests/testthat/test-ReductiveHourglassTest.R tests/testthat/test-REMatrix.R tests/testthat/test-geom.mean.R tests/testthat/test-Expressed.R tests/testthat/test-PlotCorrelation.R tests/testthat/test-PlotGeneSet.R tests/testthat/test-tf.R tests/testthat/test-PlotDistribution.R tests/testthat/test-harm.mean.R
src
src/rcpp_funcs.cpp
src/registerDynamicSymbol.c
src/RcppExports.cpp
NAMESPACE
NEWS.md
data
data/datalist
data/PhyloExpressionSetExample.rda
data/DivergenceExpressionSetExample.rda
R
R/SelectGeneSet.R R/geom.mean.R R/custom.myTAI.cols.R R/PlotReplicateQuality.R R/PlotEnrichment.R R/CollapseReplicates.R R/TPI.R R/PlotRE.R R/PlotVars.R R/PlotDistribution.R R/PlotBarRE.R R/FlatLineTest.R R/pMatrix.R R/PlotGroupDiffs.R R/DiffGenes.R R/TAI.R R/omitMatrix.R R/EnrichmentTest.R R/PlotContribution.R R/PlotPattern.R R/bootMatrix.R R/taxonomy.R R/GroupDiffs.R R/PlotCategoryExpr.R R/PlotSelectedAgeDistr.R R/RcppExports.R R/PlotSignature.R R/base.R R/pTAI.R R/ReductiveHourglassTest.R R/Expressed.R R/PlotGeneSet.R R/tf.R R/is.ExpressionSet.R R/pTDI.R R/harm.mean.R R/PlotMedians.R R/pStrata.R R/rhScore.R R/combinatorialSignificance.R R/MatchMap.R R/ecScore.R R/age.apply.R R/EarlyConservationTest.R R/taxid.R R/TDI.R R/datasets.R R/rel_exp.R R/PlotMeans.R R/PlotCorrelation.R
vignettes
vignettes/Intermediate.Rmd vignettes/Introduction.Rmd
vignettes/Figures
vignettes/Figures/Fig3.png
vignettes/Figures/Fig4.png
vignettes/Figures/Fig2.png
vignettes/Figures/Fig1.png
vignettes/Taxonomy.Rmd vignettes/Expression.Rmd vignettes/Advanced.Rmd vignettes/Enrichment.Rmd README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/age.apply.Rd man/SelectGeneSet.Rd man/TDI.Rd man/TAI.Rd man/CombinatorialSignificance.Rd man/PlotVars.Rd man/rhScore.Rd man/CollapseReplicates.Rd man/PlotCorrelation.Rd man/omitMatrix.Rd man/PlotCategoryExpr.Rd man/ReductiveHourglassTest.Rd man/PlotSelectedAgeDistr.Rd man/MatchMap.Rd man/EnrichmentTest.Rd man/PlotRE.Rd man/is.ExpressionSet.Rd man/PlotSignature.Rd man/taxonomy.Rd man/PlotBarRE.Rd man/pStrata.Rd man/FlatLineTest.Rd man/PlotPattern.Rd man/GroupDiffs.Rd man/pMatrix.Rd man/PhyloExpressionSetExample.Rd man/pTDI.Rd man/TPI.Rd man/DivergenceExpressionSetExample.Rd man/harm.mean.Rd man/PlotMeans.Rd man/geom.mean.Rd man/PlotGroupDiffs.Rd man/tf.Rd man/bar.colors.Rd man/PlotGeneSet.Rd man/bootMatrix.Rd man/ecScore.Rd man/PlotMedians.Rd man/PlotEnrichment.Rd man/PlotDistribution.Rd man/Expressed.Rd man/PlotContribution.Rd man/PlotReplicateQuality.Rd man/DiffGenes.Rd man/taxid.Rd man/REMatrix.Rd man/RE.Rd man/pTAI.Rd man/EarlyConservationTest.Rd
myTAI documentation built on July 4, 2017, 9:09 a.m.