Man pages for nLTT
Calculate the NLTT Statistic
| abc_smc_nltt | A function to perform Approximate Bayesian Computation within... |
| check_input_event_times | Checks that event times are correct |
| check_phylogenies | Check if the input is a valid collection of one or more... |
| check_step_type | Check if the step type is valid |
| check_time_unit | Check if the time unit is valid |
| default_params_doc | This function does nothing. It is intended to inherit is... |
| exampleTrees | example trees to test the functionality of the package |
| get_average_nltt_matrix | Get the average nLTT from a collection of phylogenies |
| get_branching_times | Collect the branching times from the stem age |
| get_n_lineages | Collect the number of lineages from the stem age |
| get_nltt_values | Get the nLTT values in time |
| get_norm_brts | Collect the normalized branching times from the stem age |
| get_norm_n | Collect the normalized number of lineages from the stem age |
| get_phylogeny_nltt_matrix | Extract the nLTT matrix from a phylogeny |
| mcmc_nltt | function, using a Monte Carlo Markov Chain |
| nltt_diff | Calculates the exact difference between the lineage through... |
| nltt_diff_exact | Calculates the exact, difference between the lineage through... |
| nltt_diff_exact_brts | Calculates the exact difference between the nLTT curves of... |
| nltt_diff_exact_calc_extinct | Calculates the exact difference between the nLTT curves of... |
| nltt_diff_exact_extinct | Calculates the exact difference between the nLTT curves of... |
| nltt_diff_exact_norm_brts | Calculates the exact difference between the nLTT curves of... |
| nLTT-internal | Internal nLTT functions |
| nltt_lines | Normalized version of the ape function ltt.lines. |
| nLTT-package | Package providing functions to visualize the normalized... |
| nltt_plot | Normalized version of the ape function ltt.plot |
| nltts_diff | Calculates the nLTT statistic between each phylogeny in a... |
| nltts_plot | Get the average nLTT from a collection of phylogenies |
| nLTTstat | Calculate the difference between two normalized... |
| nLTTstat_exact | Calculate the exact difference between two normalized... |
| stretch_nltt_matrix | Stretch matrix 'm' with a timestep resolution of 'dt'. |
