nltt_diff_exact_calc_extinct: Calculates the exact difference between the nLTT curves of...

In nLTT: Calculate the NLTT Statistic

Calculates the exact difference between the nLTT curves of the event times. This includes extinction events.

Description

Calculates the exact difference between the nLTT curves of the event times. This includes extinction events.

Usage

nltt_diff_exact_calc_extinct(
  event_times,
  species_number,
  event_times2,
  species_number2,
  distance_method
)

Arguments

event_times	event times of the first phylogeny
species_number	the number of species at each event time of the first phylogeny
event_times2	event times of the second phylogeny
species_number2	the number of species at each event time of the second phylogeny
distance_method	(string) absolute, or squared distance?

Author(s)

Thijs Janzen and Richèl Bilderbeek and Pedro Neves

Examples

# Generate data
n <- 10
b_times_n <- (seq(1, n) / n)
lineages_n <- b_times_n
b_times2_n <- b_times_n * b_times_n
lineages2_n <- b_times2_n

# Calculate nLTT
out <- nLTT::nltt_diff_exact_calc_extinct(
  event_times = b_times_n,
  species_number  = lineages_n,
  event_times2 = b_times2_n,
  species_number2 = lineages2_n,
  distance_method = "abs"
)
#'

nLTT documentation built on Aug. 21, 2023, 5:13 p.m.