Files in nLTT

Calculate the NLTT Statistic

MD5

NAMESPACE

DESCRIPTION

R/get_average_nltt_matrix.R R/check_step_type.R R/stretch_nltt_matrix.R R/check_phylogenies.R R/get_norm_n.R R/default_params_doc.R R/nLTTDiff.R R/get_phylogeny_nltt_matrix.R R/plot_nLTT.R R/get_norm_brts.R R/nltt_diff_exact_extinct.R R/get_nltt_values.R R/nltts_plot.R R/get_branching_times.R R/check_time_unit.R R/ABC_SMC.R R/get_n_lineages.R inst/doc/walkthrough.Rmd inst/doc/stretch_nltt_matrix.Rmd inst/doc/walkthrough.R

inst/doc/stretch_nltt_matrix.html

inst/doc/get_nltt_values.Rmd inst/doc/stretch_nltt_matrix.R inst/doc/trees_with_root_edge.R

inst/doc/nltts_plot.html

inst/doc/nltts_plot.Rmd inst/doc/nltt_diff.Rmd

inst/doc/trees_with_root_edge.html

inst/doc/get_nltt_values.R inst/doc/nltts_plot.R

inst/doc/nltt_diff.html

inst/doc/get_nltt_values.html

inst/doc/trees_with_root_edge.Rmd inst/doc/nltt_diff.R

inst/doc/walkthrough.html

inst/extdata/issue_38.RDa

build/vignette.rds

tests/testthat.R tests/testthat/test-check_step_type.R tests/testthat/test-nLTTDiff.R tests/testthat/test-nltt_diff_exact_brts.R tests/testthat/test-get_nltt_values.R tests/testthat/test-abc_smc_nltt.R tests/testthat/test-get_average_nltt.R tests/testthat/test-calculate_weight.R tests/testthat/test-nLTTstat_exact.R tests/testthat/test-get_norm_brts.R tests/testthat/test-nltt_diff_exact.R tests/testthat/test-nltts_diff.R tests/testthat/test-nLTTstat.R tests/testthat/test-style.R tests/testthat/test-stretch_nltt_matrix.R tests/testthat/test-get_norm_n.R tests/testthat/test-check_phylogenies.R tests/testthat/test-nltt_diff.R tests/testthat/Rplots.pdf tests/testthat/test-get_phylogeny_nltt_matrix.R tests/testthat/test-get_average_nltt_matrix.R tests/testthat/test-log_transform.R tests/testthat/test-mcmc_nltt.R tests/testthat/test-get_n_lineages.R tests/testthat/test-nltts_plot.R tests/testthat/test-nltt_plot.R tests/testthat/test-nltt_diff_exact_extinct.R tests/testthat/test-get_branching_times.R tests/testthat/test-check_time_unit.R tests/testthat/test-nltt_diff_exact_norm_brts.R vignettes/walkthrough.Rmd vignettes/stretch_nltt_matrix.Rmd vignettes/get_nltt_values.Rmd vignettes/nltts_plot.Rmd vignettes/nltt_diff.Rmd vignettes/trees_with_root_edge.Rmd

data/exampleTrees.rda

man/check_phylogenies.Rd man/nltt_diff_exact_extinct.Rd man/stretch_nltt_matrix.Rd man/nltt_diff_exact_brts.Rd man/nLTTstat_exact.Rd man/get_phylogeny_nltt_matrix.Rd man/nLTT-internal.Rd man/nltts_plot.Rd man/nLTT-package.Rd man/get_average_nltt_matrix.Rd man/mcmc_nltt.Rd man/nltt_diff_exact_calc_extinct.Rd man/nltt_diff.Rd man/nltt_diff_exact.Rd man/nltt_lines.Rd man/nltt_plot.Rd man/nLTTstat.Rd man/get_branching_times.Rd man/get_n_lineages.Rd man/nltts_diff.Rd man/default_params_doc.Rd man/get_nltt_values.Rd man/check_step_type.Rd man/abc_smc_nltt.Rd man/get_norm_n.Rd man/check_input_event_times.Rd man/exampleTrees.Rd man/nltt_diff_exact_norm_brts.Rd man/check_time_unit.Rd man/get_norm_brts.Rd

nLTT documentation built on Aug. 21, 2023, 5:13 p.m.