tests/testthat/test_indices.R

context("build centrality indices")
library(igraph)
library(magrittr)
library(Matrix)
test_that("betweenness correct", {
  g <- graph.empty(n = 11, directed = FALSE)
  g <- add_edges(g, c(
    1, 11, 2, 4, 3, 5, 3, 11, 4, 8, 5, 9, 5, 11, 6, 7, 6, 8,
    6, 10, 6, 11, 7, 9, 7, 10, 7, 11, 8, 9, 8, 10, 9, 10
  ))
  bc <- g %>%
    indirect_relations("depend_sp") %>%
    aggregate_positions()
  expect_equal(round(bc / 2, 4), round(betweenness(g), 4))
})

test_that("closeness correct", {
  g <- graph.empty(n = 11, directed = FALSE)
  g <- add_edges(g, c(
    1, 11, 2, 4, 3, 5, 3, 11, 4, 8, 5, 9, 5, 11, 6, 7, 6, 8,
    6, 10, 6, 11, 7, 9, 7, 10, 7, 11, 8, 9, 8, 10, 9, 10
  ))
  cc <- g %>%
    indirect_relations("dist_sp") %>%
    aggregate_positions(type = "invsum")
  expect_equal(round(cc, 4), round(closeness(g), 4))
})

test_that("evcent correct", {
  g <- graph.empty(n = 11, directed = FALSE)
  g <- add_edges(g, c(
    1, 11, 2, 4, 3, 5, 3, 11, 4, 8, 5, 9, 5, 11, 6, 7, 6, 8,
    6, 10, 6, 11, 7, 9, 7, 10, 7, 11, 8, 9, 8, 10, 9, 10
  ))
  ec <- g %>%
    indirect_relations("walks", FUN = walks_limit_prop) %>%
    aggregate_positions(type = "sum")
  expect_equal(round(ec / max(ec), 4), round(evcent(g)$vector, 4))
})

test_that("subgraph centrality correct", {
  g <- graph.empty(n = 11, directed = FALSE)
  g <- add_edges(g, c(
    1, 11, 2, 4, 3, 5, 3, 11, 4, 8, 5, 9, 5, 11, 6, 7, 6, 8,
    6, 10, 6, 11, 7, 9, 7, 10, 7, 11, 8, 9, 8, 10, 9, 10
  ))
  sc <- g %>%
    indirect_relations("walks", FUN = walks_exp) %>%
    aggregate_positions(type = "self") %>%
    round(4)
  expect_equal(sc, round(subgraph_centrality(g), 4))
})

test_that("current flow betweenness correct", {
  g <- graph.empty(n = 11, directed = FALSE)
  g <- add_edges(g, c(1, 2, 1, 3, 1, 4, 1, 5, 2, 3, 2, 4, 2, 5, 3, 4, 3, 5, 4, 5))
  g <- add_edges(g, c(1, 2, 1, 3, 1, 4, 1, 5, 2, 3, 2, 4, 2, 5, 3, 4, 3, 5, 4, 5) + 5)
  g <- add_edges(g, c(5, 11, 6, 11, 5, 6))
  n <- vcount(g)
  cent <-
    (indirect_relations(g, type = "depend_curflow", FUN = identity) + diag(n * (n - 1), 11)) %>%
    aggregate_positions(type = "sum")
  exact <- c(0.6703, 0.6703, 0.3333, 0.2691, 0.2691) # A,B,C,X,Y from Newman Paper
  expect_equal(round(cent[c(5, 6, 11, 1, 7)] / (11 * 10) - 9 / 11, 4), exact)
})

test_that("flow betweenness correct", {
  g <- graph.empty(n = 11, directed = FALSE)
  g <- add_edges(g, c(1, 2, 1, 3, 1, 4, 1, 5, 2, 3, 2, 4, 2, 5, 3, 4, 3, 5, 4, 5))
  g <- add_edges(g, c(1, 2, 1, 3, 1, 4, 1, 5, 2, 3, 2, 4, 2, 5, 3, 4, 3, 5, 4, 5) + 5)
  g <- add_edges(g, c(5, 11, 6, 11, 5, 6))
  n <- vcount(g)
  exact <- c(12, 12, 12, 12, 118, 118, 12, 12, 12, 12, 50)
  cent <- g %>%
    indirect_relations(type = "depend_netflow", netflowmode = "raw", FUN = identity) %>%
    aggregate_positions(type = "sum")
  expect_equal(cent, exact)
})

test_that("communicability betweenness correct", {
  g <- graph.empty(n = 11, directed = FALSE)
  g <- add_edges(g, c(1, 2, 1, 3, 1, 4, 1, 5, 2, 3, 2, 4, 2, 5, 3, 4, 3, 5, 4, 5))
  g <- add_edges(g, c(1, 2, 1, 3, 1, 4, 1, 5, 2, 3, 2, 4, 2, 5, 3, 4, 3, 5, 4, 5) + 5)
  g <- add_edges(g, c(5, 11, 6, 11, 5, 6))
  n <- vcount(g)
  exact <- c(
    0.2156, 0.2156, 0.2156, 0.2156, 0.6574, 0.6574, 0.2156, 0.2156,
    0.2156, 0.2156, 0.1396
  )
  cent <- g %>%
    indirect_relations(type = "depend_exp", FUN = identity) %>%
    aggregate_positions(type = "sum")
  expect_equal(round(cent, 4), exact)
})

test_that("all aggregate functions work", {
  tau_x <- matrix(c(1, 2, 3, 4), 2, 2, byrow = TRUE)
  expect_equal(aggregate_positions(tau_x, type = "prod"), c(2, 12))
  expect_equal(aggregate_positions(tau_x, type = "mean"), c(1.5, 3.5))
  expect_equal(aggregate_positions(tau_x, type = "max"), c(2, 4))
  expect_equal(aggregate_positions(tau_x, type = "min"), c(1, 3))
  expect_error(aggregate_positions(tau_x, type = "other"))
})

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netrankr documentation built on Sept. 27, 2022, 1:07 a.m.