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### New generics used with corStruct, varFunc, groupedData, and reStruct
###
### Copyright 1997-2003 Jose C. Pinheiro,
### Douglas M. Bates <bates@stat.wisc.edu>
# Copyright 2007-2011 The R Core team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# A copy of the GNU General Public License is available at
# http://www.r-project.org/Licenses/
#
ACF <-
## autocorrelation function - needed not exist if acf were generic
function(object, maxLag, ...) UseMethod("ACF")
asTable <-
## Return the object in a tabular form
function(object) UseMethod("asTable")
augPred <-
## Return the data used to fit the model augmented with the predictions
function(object, primary = NULL, minimum = min(primary),
maximum = max(primary), length.out = 51, ...) UseMethod("augPred")
"coef<-" <- "coefficients<-" <-
## Assignment of the unconstrained parameter
function(object, ..., value) UseMethod("coef<-")
collapse <-
## collapse a data frame according to a factor, or several nested factors
function(object, ...) UseMethod("collapse")
comparePred <-
## compare predictions from different fitted objects
function(object1, object2, primary = NULL,
minimum = min(primary), maximum = max(primary),
length.out = 51, level = NULL, ...) UseMethod("comparePred")
"covariate<-" <-
## Assignment of the primary covariate
function(object, value) UseMethod("covariate<-")
Dim <-
## Extract dimensions of an object. Not needed if "dims" were generic
function(object, ...) UseMethod("Dim")
fixed.effects <-
## Generic extractor for estimates of fixed effects
function(object, ...) UseMethod("fixef")
fixef <-
## Short form for generic extractor for estimates of fixed effects
function(object, ...) UseMethod("fixef")
getCovariate <-
## Return the primary covariate associated with object according to form
function(object, form = formula(object), data)
UseMethod("getCovariate")
getData <-
## Return the data.frame used to fit an object, if any was given in
## the call that produced it
function(object) UseMethod("getData")
getGroups <-
## Return the groups associated with object according to form.
function(object, form = formula(object), level, data, sep = "/")
UseMethod("getGroups")
getGroupsFormula <-
## Return the formula(s) for the groups associated with object.
## The result is a one-sided formula unless asList is TRUE in which case
## it is a list of formulas, one for each level.
function(object, asList = FALSE, sep = "/")
UseMethod("getGroupsFormula")
getResponse <-
## Return the response associated with object according to form.
function(object, form = formula(object))
UseMethod("getResponse")
isBalanced <-
## Check for balance, especially in a groupedData object
function(object, countOnly = FALSE, level) UseMethod("isBalanced")
isInitialized <-
## Determine if the object has been assigned a value
function(object) UseMethod("isInitialized")
Initialize <-
## Initialize objects
function(object, data, ...) UseMethod("Initialize")
intervals <-
## generate confidence intervals for the parameters in object
function(object, level = 0.95, ...) UseMethod("intervals")
logDet <-
## Returns the negative of the sum of the logarithm of the determinant
function(object, ...) UseMethod("logDet")
"matrix<-" <-
## Assignment of the matrix in an object representing special types of matrices
function(object, value) UseMethod("matrix<-")
Names <-
## Extract names of an object. Not needed if "names" were generic
function(object, ...) UseMethod("Names")
"Names<-" <-
## Assignment of names. Not needed if "names<-" were generic
function(object, ..., value) UseMethod("Names<-")
needUpdate <-
## Checks if model plug-in needs to be updated after an estimation cycle
function(object) UseMethod("needUpdate")
#pruneLevels <-
# ## Returns the factor with the levels attribute truncated to only those
# ## levels occuring in the factor
# function(object) UseMethod("pruneLevels")
random.effects <-
## Generic function for extracting the random effects
## If aug.frame is true, the returned data frame is augmented with
## values from the original data object, if available. The variables
## in the original data are collapsed over the groups variable by the
## function fun.
function(object, ...) UseMethod("ranef")
ranef <-
## Short form for generic function for extracting the random effects
function(object, ...) UseMethod("ranef")
recalc <-
## Recalculate condensed linear object, according to model plug-in
function(object, conLin, ...) UseMethod("recalc")
Variogram <-
## calculates variogram of a vector according to a distance matrix
function(object, distance, ...)
UseMethod("Variogram")
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