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#' @export
nlin_bor_ln <- function(x, ...) UseMethod("nlin_bor_ln")
#' Non-linearwise borderline label noise
#'
#' Introduction of \emph{Non-linearwise borderline label noise} into a classification dataset.
#'
#' \emph{Non-linearwise borderline label noise} uses an SVM to induce the decision border
#' in the dataset. Then, for each sample, its distance
#' to the decision border is computed. Finally, the
#' distances obtained are ordered in ascending order and the first (\code{level}·100)\% of them are used to determine the noisy samples.
#' For each noisy sample, the majority class among its \code{k}-nearest neighbors of a different class
#' is chosen as the new label.
#'
#' @param x a data frame of input attributes.
#' @param y a factor vector with the output class of each sample.
#' @param level a double in [0,1] with the noise level to be introduced.
#' @param k an integer with the number of nearest neighbors to be used (default: 1).
#' @param sortid a logical indicating if the indices must be sorted at the output (default: \code{TRUE}).
#' @param formula a formula with the output class and, at least, one input attribute.
#' @param data a data frame in which to interpret the variables in the formula.
#' @param ... other options to pass to the function.
#'
#' @return An object of class \code{ndmodel} with elements:
#' \item{xnoise}{a data frame with the noisy input attributes.}
#' \item{ynoise}{a factor vector with the noisy output class.}
#' \item{numnoise}{an integer vector with the amount of noisy samples per class.}
#' \item{idnoise}{an integer vector list with the indices of noisy samples.}
#' \item{numclean}{an integer vector with the amount of clean samples per class.}
#' \item{idclean}{an integer vector list with the indices of clean samples.}
#' \item{distr}{an integer vector with the samples per class in the original data.}
#' \item{model}{the full name of the noise introduction model used.}
#' \item{param}{a list of the argument values.}
#' \item{call}{the function call.}
#'
#' @references
#' L. P. F. Garcia, J. Lehmann, A. C. P. L. F. de Carvalho, and A. C. Lorena.
#' \strong{New label noise injection methods for the evaluation of noise filters.}
#' \emph{Knowledge-Based Systems}, 163:693–704, 2019.
#' \doi{10.1016/j.knosys.2018.09.031}.
#'
#' @examples
#' # load the dataset
#' data(iris2D)
#'
#' # usage of the default method
#' set.seed(9)
#' outdef <- nlin_bor_ln(x = iris2D[,-ncol(iris2D)], y = iris2D[,ncol(iris2D)], level = 0.1)
#'
#' # show results
#' summary(outdef, showid = TRUE)
#' plot(outdef)
#'
#' # usage of the method for class formula
#' set.seed(9)
#' outfrm <- nlin_bor_ln(formula = Species ~ ., data = iris2D, level = 0.1)
#'
#' # check the match of noisy indices
#' identical(outdef$idnoise, outfrm$idnoise)
#'
#' @note Noise model adapted from the papers in References, considering a mislabeling process
#' using the neighborhood of noisy samples.
#'
#' @seealso \code{\link{nei_bor_ln}}, \code{\link{ulap_bor_ln}}, \code{\link{print.ndmodel}}, \code{\link{summary.ndmodel}}, \code{\link{plot.ndmodel}}
#'
#' @name nlin_bor_ln
NULL
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#' @export
#' @rdname nlin_bor_ln
#' @importFrom "stats" "predict"
nlin_bor_ln.default <- function(x, y, level, k = 1, sortid = TRUE, ...){
######################################################
# check for errors #########
if(!is.data.frame(x)){
stop("argument \"x\" must be a data frame")
}
if(!is.factor(y)){
stop("argument \"y\" must be a factor vector")
}
if(nlevels(y) < 2){
stop("argument \"y\" must have at least 2 levels")
}
if(level < 0 || level > 1){
stop("argument \"level\" must be in [0,1]")
}
if(nrow(x) != length(y)){
stop("number of rows of \"x\" must be equal to length of \"y\"")
}
if(k <= 0){
stop("argument \"k\" must be higher than 0")
}
if(any(sapply(x, is.numeric) == FALSE)){
stop("column types of \"x\" must be numeric")
}
######################################################
# introduce noise #########
dist <- bord_dist(x = x, y = y, krn = "radial")
num_noise <- round(nrow(x)*level)
ord <- sort(x = dist, decreasing = FALSE, index.return = TRUE)$ix
if(num_noise > 0)
idx_noise <- ord[1:num_noise]
else
idx_noise <- NULL
# compute noise per class
classes <- levels(y)
nnoiseclass <- as.vector(table(factor(y[idx_noise], levels = classes)))
names(nnoiseclass) <- classes
distr <- as.vector(table(factor(y, levels = classes)))
names(distr) <- classes
# introduce noise
if(num_noise > 0){
y <- bord_noise(x, y, num_noise, idx_noise, k)
}
######################################################
# create object of class 'ndmodel' #########
call <- match.call()
call[[1]] <- as.name("nlin_bor_ln")
res <- list(xnoise = x,
ynoise = y,
numnoise = nnoiseclass,
idnoise = list(idx_noise),
numclean = distr-nnoiseclass,
idclean = list(setdiff(1:nrow(x),idx_noise)),
distr = distr,
model = "Non-linearwise borderline label noise",
param = list(level = level, k = k, sortid = sortid),
call = call
)
class(res) <- "ndmodel"
return(res)
}
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#' @export
#' @rdname nlin_bor_ln
#' @importFrom "stats" "model.frame"
nlin_bor_ln.formula <- function(formula, data, ...){
if(!is.data.frame(data)){
stop("argument \"data\" must be a data frame")
}
mf <- model.frame(formula,data)
attr(mf,"terms") <- NULL
x <- mf[,-1]
y <- mf[,1]
res <- nlin_bor_ln.default(x = x, y = y, ...)
res$call <- match.call(expand.dots = TRUE)
res$call[[1]] <- as.name("nlin_bor_ln")
return(res)
}
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