aggregate_counts: Utility function to make reference gene expression profiles

In numbat: Haplotype-Aware CNV Analysis from scRNA-Seq

Utility function to make reference gene expression profiles

Description

Utility function to make reference gene expression profiles

Usage

aggregate_counts(count_mat, annot, normalized = TRUE, verbose = TRUE)

Arguments

count_mat	matrix/dgCMatrix Gene expression counts
annot	dataframe Cell annotation with columns "cell" and "group"
normalized	logical Whether to return normalized expression values
verbose	logical Verbosity

Value

matrix Reference gene expression levels

Examples

ref_custom = aggregate_counts(count_mat_ref, annot_ref, verbose = FALSE)

numbat documentation built on May 29, 2024, 1:29 a.m.