calc_allele_lik: Calculate allele likelihoods
In numbat: Haplotype-Aware CNV Analysis from scRNA-Seq
calc_allele_lik R Documentation
Calculate allele likelihoods
Description
Calculate allele likelihoods
Usage
calc_allele_lik(pAD, DP, p_s, theta, gamma = 20)
Arguments
pAD
integer vector Paternal allele counts
DP
integer vector Total alelle counts
p_s
numeric vector Phase switch probabilities
theta
numeric Haplotype imbalance
gamma
numeric Overdispersion in the allele-specific expression
numbat documentation built on May 29, 2024, 1:29 a.m.
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| calc_allele_lik | R Documentation |
Calculate allele likelihoods
Description
Calculate allele likelihoods
Usage
calc_allele_lik(pAD, DP, p_s, theta, gamma = 20)
Arguments
pAD |
integer vector Paternal allele counts |
DP |
integer vector Total alelle counts |
p_s |
numeric vector Phase switch probabilities |
theta |
numeric Haplotype imbalance |
gamma |
numeric Overdispersion in the allele-specific expression |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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