exp_hclust: Run smoothed expression-based hclust

In numbat: Haplotype-Aware CNV Analysis from scRNA-Seq

Run smoothed expression-based hclust

Description

Run smoothed expression-based hclust

Usage

exp_hclust(
  count_mat,
  lambdas_ref,
  gtf,
  sc_refs = NULL,
  window = 101,
  ncores = 1,
  verbose = TRUE
)

Arguments

count_mat	dgCMatrix Gene counts
lambdas_ref	matrix Reference expression profiles
gtf	dataframe Transcript GTF
sc_refs	named list Reference choices for single cells
window	integer Sliding window size
ncores	integer Number of cores
verbose	logical Verbosity

numbat documentation built on May 29, 2024, 1:29 a.m.