onemap: Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses

Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction). All analysis are based on multipoint approaches using hidden Markov models.

AuthorGabriel Margarido [aut], Marcelo Mollinari [aut, cre], Karl Broman [ctb], Augusto Garcia [ctb]
Date of publication2013-09-09 20:03:53
MaintainerMarcelo Mollinari <mmollina@usp.br>
LicenseGPL-3
Version2.0-4

View on CRAN

Files in this package

onemap
onemap/inst
onemap/inst/BUGS
onemap/inst/CITATION
onemap/inst/HISTORY
onemap/inst/example
onemap/inst/example/example.out.txt
onemap/inst/example/fake.bc.onemap.raw
onemap/inst/example/fake.f2.onemap.raw
onemap/inst/doc
onemap/inst/doc/Tutorial_Onemap_reduced_version.Rnw
onemap/inst/doc/Tutorial_Onemap_reduced_version.pdf
onemap/inst/doc/Tutorial_Onemap_reduced_version.R
onemap/src
onemap/src/hmm_out.h
onemap/src/twopts.c
onemap/src/threepts.h
onemap/src/hmm_out.c
onemap/src/twopts.h
onemap/src/Makevars.win
onemap/src/threepts.c
onemap/NAMESPACE
onemap/data
onemap/data/fake.bc.onemap.RData
onemap/data/example.out.RData
onemap/data/fake.f2.onemap.RData
onemap/R
onemap/R/read.outcross.R onemap/R/make.seq.R onemap/R/rf.2pts.R onemap/R/phases.R onemap/R/cr2pts.R onemap/R/avoid.reverse.R onemap/R/ripple.seq.R onemap/R/ug.R onemap/R/marker.type.R onemap/R/read.mapmaker.R onemap/R/drop.marker.R onemap/R/map.R onemap/R/adjust.rils.R onemap/R/rcd.R onemap/R/order.seq.R onemap/R/map_func.R onemap/R/try.seq.R onemap/R/defunct.R onemap/R/rf.graph.table.R onemap/R/comb.ger.R onemap/R/add.marker.R onemap/R/seriation.R onemap/R/group.R onemap/R/permutations.R onemap/R/est.map.c.R onemap/R/compare.R onemap/R/write.map.R onemap/R/return.geno.R onemap/R/codif.data.R onemap/R/zzz.R onemap/R/record.R onemap/R/draw.map.R onemap/R/acum.R
onemap/vignettes
onemap/vignettes/figures
onemap/vignettes/figures/tutorial.pdf
onemap/vignettes/figures/rconsole.png
onemap/vignettes/Tutorial_Onemap_reduced_version.Rnw
onemap/MD5
onemap/build
onemap/build/vignette.rds
onemap/DESCRIPTION
onemap/LICENSE.note
onemap/man
onemap/man/try.seq.Rd onemap/man/read.mapmaker.Rd onemap/man/onemap-package.Rd onemap/man/add_drop.Rd onemap/man/example.out.Rd onemap/man/group.Rd onemap/man/map.Rd onemap/man/fake.f2.onemap.Rd onemap/man/rf.graph.table.Rd onemap/man/ug.Rd onemap/man/onemap-internal.Rd onemap/man/set.map.fun.Rd onemap/man/fake.bc.onemap.Rd onemap/man/read.outcross.Rd onemap/man/marker.type.Rd onemap/man/rcd.Rd onemap/man/map_func.Rd onemap/man/record.Rd onemap/man/draw.map.Rd onemap/man/compare.Rd onemap/man/def.rf.3pts.Rd onemap/man/seriation.Rd onemap/man/ripple.seq.Rd onemap/man/order.seq.Rd onemap/man/write.map.Rd onemap/man/make.seq.Rd onemap/man/rf.2pts.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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