map_save_ram: Perform map using background objects with only selected...

In onemap: Construction of Genetic Maps in Experimental Crosses

Perform map using background objects with only selected markers. It saves ram memory during the procedure. It is useful if dealing with many markers in total data set.

Description

Perform map using background objects with only selected markers. It saves ram memory during the procedure. It is useful if dealing with many markers in total data set.

Usage

map_save_ram(
  input.seq,
  tol = 1e-04,
  verbose = FALSE,
  rm_unlinked = FALSE,
  phase_cores = 1,
  size = NULL,
  overlap = NULL,
  parallelization.type = "PSOCK",
  max.gap = FALSE
)

Arguments

input.seq	object of class sequence
tol	tolerance for the C routine, i.e., the value used to evaluate convergence.
verbose	If TRUE, print tracing information.
rm_unlinked	When some pair of markers do not follow the linkage criteria, if TRUE one of the markers is removed and returns a vector with remaining marker numbers (useful for mds_onemap and map_avoid_unlinked functions).
phase_cores	The number of parallel processes to use when estimating the phase of a marker. (Should be no more than 4)
size	The center size around which an optimum is to be searched
overlap	The desired overlap between batches
parallelization.type	one of the supported cluster types. This should be either PSOCK (default) or FORK.
max.gap	the marker will be removed if it have gaps higher than this defined threshold in both sides

onemap documentation built on Nov. 26, 2022, 9:05 a.m.