plot.openCR: Plot Estimates

In openCR: Open Population Capture-Recapture

Plot Estimates

Description

Session-specific estimates of the chosen parameter are plotted.

Usage

## S3 method for class 'openCR'
 plot(x, par = "phi", newdata = NULL, add = FALSE, xoffset = 0, ylim = NULL, 
    useintervals = TRUE, CI = TRUE, intermediate.x = TRUE, alpha = 0.05, stratum = 1, ...)
    

Arguments

x	openCR object from openCR.fit
par	character names of parameter to plot
newdata	dataframe of predictor values for predict (optional)
add	logical; if TRUE then points are added to an existing plot
xoffset	numeric offset to be added to all x values
ylim	numeric vector of limits on y-axis
useintervals	logical; if TRUE then x values are spaced according to the intervals attribute
CI	logical; if TRUE then 1-alpha confidence intervals are plotted
intermediate.x	logical; if TRUE then turnover parameters are plotted at the mid point on the x axis of the interval to which they relate
alpha	numeric confidence level default (alpha = 0.05) is 95% interval
stratum	numeric; stratum to plot if more than one
...	other arguments passed to plot, points and segments

Details

If ylim is not provided it is set automatically.

For customization you may wish to prepare a base plot with plot(... , type = 'n') and use add = TRUE.

Value

The x coordinates (including xoffset) are returned invisibly.

See Also

predict, plot.derivedopenCR)

Examples

## Not run: 

fit <- openCR.fit(join(ovenCH), type='CJS', model = phi~session)
plot(fit,'phi', pch = 16, cex=1.3, yl=c(0,1))


## End(Not run)

openCR documentation built on Sept. 25, 2022, 5:06 p.m.