agf | Angiosperms Gymnosperms Ferns |
AngGym | Angiosperms Gymnosperms |
A_selected | Adjacency Matrix for Orthology Graph |
coltips | Colouring Tree Tips |
gapless_msa | Remove Gaps in a MSA |
getseqGS | Get the GS Sequence |
madRoot | Find The Root of a Phylogenetic Tree Using MAD Method |
mapTrees | Map Gene Tree into Species Tree |
mltree | Build Up a ML Tree |
msa | Multiple Sequence Alignment |
orthG | Infer GS OrthoGroups Within a Set of Species |
orthology | Infer OrthoGroups Using Tree Reconciliation |
orthP | Search Orthologous of a Given Protein |
sdf | Seed Plants and Ferns GS |
selected_tr | Ultrametric Rooted Seed Plants Tree |
speciesGS | Map Species Names |
subsetGS | GS Proteins Report |
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