orthP: Search Orthologous of a Given Protein
In orthGS: Orthology vs Paralogy Relationships among Glutamine Synthetase from Plants
orthP R Documentation
Search Orthologous of a Given Protein
Description
Searches orthologous of a given protein within a set of selected species
Usage
orthP(phylo_id, set = "all")
Arguments
phylo_id
phylo_id of the query protein
set
set of species of interest provided as a character vector, either with the binomial or short code of the species (see details).
Details
When set = "all", the search will be carry out against all the species in the database.
Value
A list with thee elements: 1. subtree of the relevant proteins; 2. vector color; 3. phylo_ids of the orthologous found.
Examples
orthP(phylo_id = "Pp_GS1a", set = c("Pp", "Psy", "Psm", "Ap"))
orthGS documentation built on June 8, 2025, 12:37 p.m.
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| orthP | R Documentation |
Search Orthologous of a Given Protein
Description
Searches orthologous of a given protein within a set of selected species
Usage
orthP(phylo_id, set = "all")
Arguments
phylo_id |
phylo_id of the query protein |
set |
set of species of interest provided as a character vector, either with the binomial or short code of the species (see details). |
Details
When set = "all", the search will be carry out against all the species in the database.
Value
A list with thee elements: 1. subtree of the relevant proteins; 2. vector color; 3. phylo_ids of the orthologous found.
Examples
orthP(phylo_id = "Pp_GS1a", set = c("Pp", "Psy", "Psm", "Ap"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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