orthG: Infer GS OrthoGroups Within a Set of Species
In orthGS: Orthology vs Paralogy Relationships among Glutamine Synthetase from Plants
orthG R Documentation
Infer GS OrthoGroups Within a Set of Species
Description
Infers GS orthogroups using tree reconciliation
Usage
orthG(set = "all")
Arguments
set
set of species of interest provided as a character vector either with the binomial or short code of the species (see data(sdf)).
Details
When set = "all", all the species in the database will be included.
Value
A list with two elements. The first one is the adjacency matrix (1 for orthologous, 0 for paralogous). The second element is an orthogroup graph.
Examples
orthG(set = c("Pp", "Psy", "Psm", "Ap"))
orthGS documentation built on June 8, 2025, 12:37 p.m.
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| orthG | R Documentation |
Infer GS OrthoGroups Within a Set of Species
Description
Infers GS orthogroups using tree reconciliation
Usage
orthG(set = "all")
Arguments
set |
set of species of interest provided as a character vector either with the binomial or short code of the species (see data(sdf)). |
Details
When set = "all", all the species in the database will be included.
Value
A list with two elements. The first one is the adjacency matrix (1 for orthologous, 0 for paralogous). The second element is an orthogroup graph.
Examples
orthG(set = c("Pp", "Psy", "Psm", "Ap"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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