Nothing
tests/testthat/test-3c_costing_medication_functions.R
In packDAMipd: Decision Analysis Modelling Package with Parameters Estimation Ability from Individual Patient Level Data
###############################################################################
context("testing microcosting patches")
test_that("testing microcosting patches", {
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
expect_equal(res$totcost_period_patches, c(1081.30, 604.32), tolerance = 1e-3)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "jg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg/b"))
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = NULL,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = NA,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
# no cols with drug names
conv_file <- system.file("extdata", "Med_calc_nodrugcol.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
# no column for form in conversion table
conv_file <- system.file("extdata", "Med_calc_noformcol.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
# no unit column in conversion table
conv_file <- system.file("extdata", "Med_calc_nounitcol.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
#no conversion factor column in conversion table
conv_file <- system.file("extdata", "Med_calc_noconvfactorcol.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
expect_error(microcosting_patches_wide(ind_part_data = NULL,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = NULL,
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = NULL,
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = NULL,
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = NULL,
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = NULL,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = NULL,
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = NULL,
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = NULL,
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
# no brand information
med_costs_file <- system.file("extdata", "average_unit_costs_med.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = NULL,
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NULL)
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = NA,
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NULL)
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = NULL,
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NA)
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = NULL,
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "NA"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_errorbrand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
## Information is coded in the data file
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_with_codes.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = "patch_unit_str",
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Buprenorphine", "Fentanyl")),
list_of_code_freq =
list(c(1, 2, 3), c("once a day", "twice a day", "once a week")),
list_of_code_dose_unit =
list(c(1, 2), c("mcg/hr", "mcg/day")),
list_of_code_brand = list(c(1, 2, 3),
c("BuTrans", "Fencino", "Butec")),
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
expect_error(microcosting_patches_wide(
ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2),
c("Buprenorphine", "Fentanyl")),
list_of_code_freq =
list(c(1, 2, 3),
c("once a day", "twice a day",
"once a week")),
list_of_code_dose_unit =
list(c(1, 2),
c("mcg/hr", "mcg/day")),
list_of_code_brand =
list(c(1, 2, 3), c("BuTrans",
"Fencino", "Butec")),
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_nodosage.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_unitnotidentify.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_nopatchname.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_nounitcostcol.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc_unit_notright.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
conv_file <- system.file("extdata", "Med_calc_testNA.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1286, 2880), tolerance = 1e-1)
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_all.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1286, NA), tolerance = 1e-3)
###############################################################################
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_all.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg")
expect_equal(res$totmed_period_tablets, c(608.5714, 0), tolerance = 1e-3)
expect_error(microcosting_tablets_wide(ind_part_data = NULL,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = NULL,
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_all_no_tabname.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg")
expect_equal(res$totmed_period_tablets, c(608.5714, 48), tolerance = 1e-3)
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NULL)
expect_equal(res$totmed_period_tablets, c(608.5714, 48), tolerance = 1e-3)
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NA)
expect_equal(res$totmed_period_tablets, c(608.5714, 48), tolerance = 1e-3)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "NA"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_brandcolname_error.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NA))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_sizecol_error.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NA))
#no brand name for tablets
med_costs_file <- system.file("extdata", "average_unit_costs_med.csv",
package = "packDAMipd")
med_costs <- load_trial_data(med_costs_file)
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = NULL,
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg")
expect_equal(res$totmed_period_tablets, c(608.5714, 48), tolerance = 1e-3)
med_costs_file <- system.file("extdata",
"average_unit_costs_med_nounitcost.csv",
package = "packDAMipd")
med_costs <- load_trial_data(med_costs_file)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = NULL,
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
med_costs_file <- system.file("extdata", "average_unit_costs_med.csv",
package = "packDAMipd")
med_costs <- load_trial_data(med_costs_file)
data_file <- system.file("extdata", "medication_namemissing.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = NULL,
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_namecolname_error.csv",
package = "packDAMipd")
med_costs <- load_trial_data(med_costs_file)
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = NULL,
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_formcolname_error.csv",
package = "packDAMipd")
med_costs <- load_trial_data(med_costs_file)
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = NULL,
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
## Information is coded in the data file
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_with_codes.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Buprenorphine", "Fentanyl")),
list_of_code_freq =
list(c(1, 2, 3),
c("once a day", "twice a day", "once a week")),
list_of_code_dose_unit =
list(c(1, 2), c("mcg", "mg")),
list_of_code_brand = list(c(1, 2), c("Buprenorphine",
"Temgesic")),
eqdose_cov_tab = table,
basis_strength_unit = "mg")
expect_equal(res$totmed_period_tablets, c(1217, 96), tolerance = 1e-1)
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Buprenorphine", "Fentanyl")),
list_of_code_freq =
list(c(1, 2, 3),
c("once a day", "twice a day",
"once a week")),
list_of_code_dose_unit =
list(c(1, 2), c("mcg", "mg")),
list_of_code_brand = list(c(1, 2),
c("Buprenorphine", "Temgesic")),
eqdose_cov_tab = NULL,
basis_strength_unit = "mg")
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Buprenorphine", "Fentanyl")),
list_of_code_freq =
list(c(1, 2, 3),
c("once a day", "twice a day", "once a week")),
list_of_code_dose_unit =
list(c(1, 2), c("mcg", "mg")),
list_of_code_brand = list(c(1, 2),
c("Buprenorphine", "Temgesic")),
eqdose_cov_tab = NA,
basis_strength_unit = "mg")
})
###############################################################################
################################################################################
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL)
expect_equal(res$totmed_period_liquid, c(22, 9),
tolerance = 1e-3)
expect_error(microcosting_liquids_wide(
ind_part_data = NULL,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = NULL,
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = NULL,
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = NULL,
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = NULL,
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = NULL,
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = NULL,
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = NULL,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = NULL,
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = NULL,
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = NULL,
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = NULL,
basis_strength_unit = NULL
)
expect_equal(res$totmed_period_liquid, c(22, 9), tolerance = 1e-3)
res <- microcosting_liquids_wide(ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = NULL,
basis_strength_unit = NA)
expect_equal(res$totmed_period_liquid, c(22, 9), tolerance = 1e-3)
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = NULL,
basis_strength_unit = "mg/ml")
expect_equal(res$totmed_period_liquid, c(22, 9), tolerance = 1e-3)
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = NULL,
basis_strength_unit = "mg/hh"))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq_codes.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = "str_unit",
bottle_size = "liq_bottle_size",
bottle_size_unit = "bottle_unit",
bottle_lasts = "liq_lasts",
bottle_lasts_unit = "lasts_unit",
preparation_dose = "liq_pre",
preparation_unit = "pre_unit",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Morphine", "Oxycodone")),
list_of_code_brand =
list(c(1, 2), c("Oramorph", "Oxycodone")),
list_of_code_dose_unit =
list(c(1, 2), c("mg/ml", "g/ml")),
list_of_code_bottle_size_unit =
list(c(1, 2), c("ml", "l")),
list_of_code_bottle_lasts_unit =
list(c(1, 2, 3), c("days", "weeks", "months")),
list_preparation_dose_unit =
list(c(1, 2), c("mg/ml", "g/ml")),
eqdose_covtab = NULL,
basis_strength_unit = "mg/ml")
expect_equal(res$totmed_period_liquid, c(22, 9), tolerance = 1e-3)
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq_codes_notprep.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = "str_unit",
bottle_size = "liq_bottle_size",
bottle_size_unit = "bottle_unit",
bottle_lasts = "liq_lasts",
bottle_lasts_unit = "lasts_unit",
preparation_dose = "liq_pre",
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Morphine", "Oxycodone")),
list_of_code_brand =
list(c(1, 2), c("Oramorph", "Oxycodone")),
list_of_code_dose_unit =
list(c(1, 2), c("mg/ml", "g/ml")),
list_of_code_bottle_size_unit =
list(c(1, 2), c("ml", "l")),
list_of_code_bottle_lasts_unit =
list(c(1, 2, 3), c("days", "weeks", "months")),
list_preparation_dose_unit = NULL,
eqdose_covtab = NULL,
basis_strength_unit = "mg/ml")
expect_equal(res$totmed_period_liquid, c(22, 9), tolerance = 1e-3)
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = "str_unit",
bottle_size = "liq_bottle_size",
bottle_size_unit = "bottle_unit",
bottle_lasts = "liq_lasts",
bottle_lasts_unit = "lasts_unit",
preparation_dose = "liq_pre",
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Morphine", "Oxycodone")),
list_of_code_brand =
list(c(1, 2), c("Oramorph", "Oxycodone")),
list_of_code_dose_unit =
list(c(1, 2), c("mg/ml", "g/ml")),
list_of_code_bottle_size_unit =
list(c(1, 2), c("ml", "l")),
list_of_code_bottle_lasts_unit =
list(c(1, 2, 3), c("days", "weeks", "months")),
list_preparation_dose_unit = NULL,
eqdose_covtab = NA,
basis_strength_unit = "mg/ml")
expect_equal(res$totmed_period_liquid, c(22, 9), tolerance = 1e-3)
data_file <- system.file("extdata",
"medication_liq_codes_namenotsameasdose.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = "str_unit",
bottle_size = "liq_bottle_size",
bottle_size_unit = "bottle_unit",
bottle_lasts = "liq_lasts",
bottle_lasts_unit = "lasts_unit",
preparation_dose = "liq_pre",
preparation_unit = "pre_unit",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Morphine", "Oxycodone")),
list_of_code_brand =
list(c(1, 2), c("Oramorph", "Oxycodone")),
list_of_code_dose_unit =
list(c(1, 2), c("mg/ml", "g/ml")),
list_of_code_bottle_size_unit =
list(c(1, 2), c("ml", "l")),
list_of_code_bottle_lasts_unit =
list(c(1, 2, 3), c("days", "weeks", "months")),
list_preparation_dose_unit =
list(c(1, 2), c("mg/ml", "g/ml")),
eqdose_covtab = NA,
basis_strength_unit = "mg/ml"))
med_costs_file <-
system.file("extdata", "average_unit_costs_med_brand_errorbrand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
med_costs_file <-
system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq_liqlastsbeforeday.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
)
expect_equal(res$totmed_period_liquid, c(482, 9), tolerance = 1e-3)
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq_nonamecol.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand_nounitcostcol.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_nomatchingdose.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_bottlevol_notmatching.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_notcostedperbottle.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq_bottlevol_unitdiff.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc_unit_notright.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_all.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL)
expect_equal(res$totmed_period_liquid, c(22, NA), tolerance = 1e-3)
###############################################################################
###############################################################################
context("testing microcosting patches when data being long format")
test_that("testing microcosting patches when data being long format", {
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
names <- colnames(ind_part_data)
ending <- length(names)
ind_part_data_long <- tidyr::gather(ind_part_data, measurement, value,
names[2]:names[ending], factor_key = TRUE)
the_columns <- c("measurement", "value")
#using the package price when the brand name of the medication is known
res <- microcosting_patches_long(the_columns,
ind_part_data_long = ind_part_data_long,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr")
index <- which(res$measurment == "totmed_period_patches")[1]
expect_equal(as.numeric(res$value[index]), 1285.714, tolerance = 1e-3)
expect_error(microcosting_patches_long(the_columns,
ind_part_data_long = NULL,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
})
###############################################################################
###############################################################################
context("testing microcosting liquids when data being long format")
test_that("testing microcosting liquids when data being long format", {
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
names <- colnames(ind_part_data)
ending <- length(names)
ind_part_data_long <- tidyr::gather(ind_part_data, measurement, value,
names[2]:names[ending], factor_key = TRUE)
the_columns <- c("measurement", "value")
res <- microcosting_liquids_long(the_columns,
ind_part_data_long = ind_part_data_long,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL)
index <- which(res$measurment == "totmed_period_liquid")[1]
expect_equal(as.numeric(res$value[index]), 22, tolerance = 1e-3)
expect_error(microcosting_liquids_long(the_columns,
ind_part_data_long = NULL,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
})
###############################################################################
###############################################################################
context("testing microcosting tablets when data being long format")
test_that("testing microcosting tablets when data being long format", {
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_all.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
names <- colnames(ind_part_data)
ending <- length(names)
ind_part_data_long <- tidyr::gather(ind_part_data, measurement, value,
names[2]:names[ending], factor_key = TRUE)
the_columns <- c("measurement", "value")
res <- microcosting_tablets_long(the_columns,
ind_part_data_long = ind_part_data_long,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg")
index <- which(res$measurment == "totmed_period_tablets")[1]
expect_equal(as.numeric(res$value[index]), 608.57, tolerance = 1e-3)
expect_error(microcosting_tablets_long(the_columns,
ind_part_data_long = NULL,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
})
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###############################################################################
context("testing microcosting patches")
test_that("testing microcosting patches", {
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
expect_equal(res$totcost_period_patches, c(1081.30, 604.32), tolerance = 1e-3)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "jg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg/b"))
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = NULL,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = NA,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
# no cols with drug names
conv_file <- system.file("extdata", "Med_calc_nodrugcol.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
# no column for form in conversion table
conv_file <- system.file("extdata", "Med_calc_noformcol.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
# no unit column in conversion table
conv_file <- system.file("extdata", "Med_calc_nounitcol.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
#no conversion factor column in conversion table
conv_file <- system.file("extdata", "Med_calc_noconvfactorcol.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NA,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
expect_error(microcosting_patches_wide(ind_part_data = NULL,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = NULL,
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = NULL,
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = NULL,
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = NULL,
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = NULL,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = NULL,
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = NULL,
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = NULL,
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
# no brand information
med_costs_file <- system.file("extdata", "average_unit_costs_med.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = NULL,
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NULL)
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = NA,
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NULL)
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = NULL,
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NA)
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = NULL,
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "NA"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_errorbrand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
## Information is coded in the data file
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_with_codes.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = "patch_unit_str",
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Buprenorphine", "Fentanyl")),
list_of_code_freq =
list(c(1, 2, 3), c("once a day", "twice a day", "once a week")),
list_of_code_dose_unit =
list(c(1, 2), c("mcg/hr", "mcg/day")),
list_of_code_brand = list(c(1, 2, 3),
c("BuTrans", "Fencino", "Butec")),
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1285.714, 2880), tolerance = 1e-3)
expect_error(microcosting_patches_wide(
ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2),
c("Buprenorphine", "Fentanyl")),
list_of_code_freq =
list(c(1, 2, 3),
c("once a day", "twice a day",
"once a week")),
list_of_code_dose_unit =
list(c(1, 2),
c("mcg/hr", "mcg/day")),
list_of_code_brand =
list(c(1, 2, 3), c("BuTrans",
"Fencino", "Butec")),
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_nodosage.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_unitnotidentify.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_nopatchname.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_nounitcostcol.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc_unit_notright.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
conv_file <- system.file("extdata", "Med_calc_testNA.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1286, 2880), tolerance = 1e-1)
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_all.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
res <- microcosting_patches_wide(ind_part_data = ind_part_data,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr")
expect_equal(res$totmed_period_patches, c(1286, NA), tolerance = 1e-3)
###############################################################################
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_all.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg")
expect_equal(res$totmed_period_tablets, c(608.5714, 0), tolerance = 1e-3)
expect_error(microcosting_tablets_wide(ind_part_data = NULL,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = NULL,
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_all_no_tabname.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the medication is known
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg")
expect_equal(res$totmed_period_tablets, c(608.5714, 48), tolerance = 1e-3)
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NULL)
expect_equal(res$totmed_period_tablets, c(608.5714, 48), tolerance = 1e-3)
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NA)
expect_equal(res$totmed_period_tablets, c(608.5714, 48), tolerance = 1e-3)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "NA"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_brandcolname_error.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NA))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_sizecol_error.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = NA))
#no brand name for tablets
med_costs_file <- system.file("extdata", "average_unit_costs_med.csv",
package = "packDAMipd")
med_costs <- load_trial_data(med_costs_file)
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = NULL,
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg")
expect_equal(res$totmed_period_tablets, c(608.5714, 48), tolerance = 1e-3)
med_costs_file <- system.file("extdata",
"average_unit_costs_med_nounitcost.csv",
package = "packDAMipd")
med_costs <- load_trial_data(med_costs_file)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = NULL,
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
med_costs_file <- system.file("extdata", "average_unit_costs_med.csv",
package = "packDAMipd")
med_costs <- load_trial_data(med_costs_file)
data_file <- system.file("extdata", "medication_namemissing.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = NULL,
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_namecolname_error.csv",
package = "packDAMipd")
med_costs <- load_trial_data(med_costs_file)
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = NULL,
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_formcolname_error.csv",
package = "packDAMipd")
med_costs <- load_trial_data(med_costs_file)
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
expect_error(microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = NULL,
dose_med = "tab_strength",
unit_med = NULL,
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
## Information is coded in the data file
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_with_codes.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Buprenorphine", "Fentanyl")),
list_of_code_freq =
list(c(1, 2, 3),
c("once a day", "twice a day", "once a week")),
list_of_code_dose_unit =
list(c(1, 2), c("mcg", "mg")),
list_of_code_brand = list(c(1, 2), c("Buprenorphine",
"Temgesic")),
eqdose_cov_tab = table,
basis_strength_unit = "mg")
expect_equal(res$totmed_period_tablets, c(1217, 96), tolerance = 1e-1)
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Buprenorphine", "Fentanyl")),
list_of_code_freq =
list(c(1, 2, 3),
c("once a day", "twice a day",
"once a week")),
list_of_code_dose_unit =
list(c(1, 2), c("mcg", "mg")),
list_of_code_brand = list(c(1, 2),
c("Buprenorphine", "Temgesic")),
eqdose_cov_tab = NULL,
basis_strength_unit = "mg")
res <- microcosting_tablets_wide(ind_part_data = ind_part_data,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Buprenorphine", "Fentanyl")),
list_of_code_freq =
list(c(1, 2, 3),
c("once a day", "twice a day", "once a week")),
list_of_code_dose_unit =
list(c(1, 2), c("mcg", "mg")),
list_of_code_brand = list(c(1, 2),
c("Buprenorphine", "Temgesic")),
eqdose_cov_tab = NA,
basis_strength_unit = "mg")
})
###############################################################################
################################################################################
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL)
expect_equal(res$totmed_period_liquid, c(22, 9),
tolerance = 1e-3)
expect_error(microcosting_liquids_wide(
ind_part_data = NULL,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = NULL,
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = NULL,
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = NULL,
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = NULL,
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = NULL,
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = NULL,
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = NULL,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = NULL,
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = NULL,
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = NULL,
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = NULL,
basis_strength_unit = NULL
)
expect_equal(res$totmed_period_liquid, c(22, 9), tolerance = 1e-3)
res <- microcosting_liquids_wide(ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = NULL,
basis_strength_unit = NA)
expect_equal(res$totmed_period_liquid, c(22, 9), tolerance = 1e-3)
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = NULL,
basis_strength_unit = "mg/ml")
expect_equal(res$totmed_period_liquid, c(22, 9), tolerance = 1e-3)
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = NULL,
basis_strength_unit = "mg/hh"))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq_codes.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = "str_unit",
bottle_size = "liq_bottle_size",
bottle_size_unit = "bottle_unit",
bottle_lasts = "liq_lasts",
bottle_lasts_unit = "lasts_unit",
preparation_dose = "liq_pre",
preparation_unit = "pre_unit",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Morphine", "Oxycodone")),
list_of_code_brand =
list(c(1, 2), c("Oramorph", "Oxycodone")),
list_of_code_dose_unit =
list(c(1, 2), c("mg/ml", "g/ml")),
list_of_code_bottle_size_unit =
list(c(1, 2), c("ml", "l")),
list_of_code_bottle_lasts_unit =
list(c(1, 2, 3), c("days", "weeks", "months")),
list_preparation_dose_unit =
list(c(1, 2), c("mg/ml", "g/ml")),
eqdose_covtab = NULL,
basis_strength_unit = "mg/ml")
expect_equal(res$totmed_period_liquid, c(22, 9), tolerance = 1e-3)
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq_codes_notprep.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = "str_unit",
bottle_size = "liq_bottle_size",
bottle_size_unit = "bottle_unit",
bottle_lasts = "liq_lasts",
bottle_lasts_unit = "lasts_unit",
preparation_dose = "liq_pre",
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Morphine", "Oxycodone")),
list_of_code_brand =
list(c(1, 2), c("Oramorph", "Oxycodone")),
list_of_code_dose_unit =
list(c(1, 2), c("mg/ml", "g/ml")),
list_of_code_bottle_size_unit =
list(c(1, 2), c("ml", "l")),
list_of_code_bottle_lasts_unit =
list(c(1, 2, 3), c("days", "weeks", "months")),
list_preparation_dose_unit = NULL,
eqdose_covtab = NULL,
basis_strength_unit = "mg/ml")
expect_equal(res$totmed_period_liquid, c(22, 9), tolerance = 1e-3)
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = "str_unit",
bottle_size = "liq_bottle_size",
bottle_size_unit = "bottle_unit",
bottle_lasts = "liq_lasts",
bottle_lasts_unit = "lasts_unit",
preparation_dose = "liq_pre",
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Morphine", "Oxycodone")),
list_of_code_brand =
list(c(1, 2), c("Oramorph", "Oxycodone")),
list_of_code_dose_unit =
list(c(1, 2), c("mg/ml", "g/ml")),
list_of_code_bottle_size_unit =
list(c(1, 2), c("ml", "l")),
list_of_code_bottle_lasts_unit =
list(c(1, 2, 3), c("days", "weeks", "months")),
list_preparation_dose_unit = NULL,
eqdose_covtab = NA,
basis_strength_unit = "mg/ml")
expect_equal(res$totmed_period_liquid, c(22, 9), tolerance = 1e-3)
data_file <- system.file("extdata",
"medication_liq_codes_namenotsameasdose.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = "str_unit",
bottle_size = "liq_bottle_size",
bottle_size_unit = "bottle_unit",
bottle_lasts = "liq_lasts",
bottle_lasts_unit = "lasts_unit",
preparation_dose = "liq_pre",
preparation_unit = "pre_unit",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names =
list(c(1, 2), c("Morphine", "Oxycodone")),
list_of_code_brand =
list(c(1, 2), c("Oramorph", "Oxycodone")),
list_of_code_dose_unit =
list(c(1, 2), c("mg/ml", "g/ml")),
list_of_code_bottle_size_unit =
list(c(1, 2), c("ml", "l")),
list_of_code_bottle_lasts_unit =
list(c(1, 2, 3), c("days", "weeks", "months")),
list_preparation_dose_unit =
list(c(1, 2), c("mg/ml", "g/ml")),
eqdose_covtab = NA,
basis_strength_unit = "mg/ml"))
med_costs_file <-
system.file("extdata", "average_unit_costs_med_brand_errorbrand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
))
med_costs_file <-
system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq_liqlastsbeforeday.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL
)
expect_equal(res$totmed_period_liquid, c(482, 9), tolerance = 1e-3)
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq_nonamecol.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand_nounitcostcol.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_nomatchingdose.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_bottlevol_notmatching.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata",
"average_unit_costs_med_brand_notcostedperbottle.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq_bottlevol_unitdiff.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc_unit_notright.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
expect_error(microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_all.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
#using the package price when the brand name of the me
res <- microcosting_liquids_wide(
ind_part_data = ind_part_data,
name_med = "liq_name",
brand_med = "liq_brand",
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL)
expect_equal(res$totmed_period_liquid, c(22, NA), tolerance = 1e-3)
###############################################################################
###############################################################################
context("testing microcosting patches when data being long format")
test_that("testing microcosting patches when data being long format", {
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
names <- colnames(ind_part_data)
ending <- length(names)
ind_part_data_long <- tidyr::gather(ind_part_data, measurement, value,
names[2]:names[ending], factor_key = TRUE)
the_columns <- c("measurement", "value")
#using the package price when the brand name of the medication is known
res <- microcosting_patches_long(the_columns,
ind_part_data_long = ind_part_data_long,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr")
index <- which(res$measurment == "totmed_period_patches")[1]
expect_equal(as.numeric(res$value[index]), 1285.714, tolerance = 1e-3)
expect_error(microcosting_patches_long(the_columns,
ind_part_data_long = NULL,
name_med = "patch_name",
brand_med = "patch_brand",
dose_med = "patch_strength",
unit_med = NULL,
no_taken = "patch_no_taken",
freq_taken = "patch_frequency",
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
list_of_code_brand = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mcg/hr"))
})
###############################################################################
###############################################################################
context("testing microcosting liquids when data being long format")
test_that("testing microcosting liquids when data being long format", {
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_liq.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
names <- colnames(ind_part_data)
ending <- length(names)
ind_part_data_long <- tidyr::gather(ind_part_data, measurement, value,
names[2]:names[ending], factor_key = TRUE)
the_columns <- c("measurement", "value")
res <- microcosting_liquids_long(the_columns,
ind_part_data_long = ind_part_data_long,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL)
index <- which(res$measurment == "totmed_period_liquid")[1]
expect_equal(as.numeric(res$value[index]), 22, tolerance = 1e-3)
expect_error(microcosting_liquids_long(the_columns,
ind_part_data_long = NULL,
name_med = "liq_name",
brand_med = NULL,
dose_med = "liq_strength",
unit_med = NULL,
bottle_size = "liq_bottle_size",
bottle_size_unit = NULL,
bottle_lasts = "liq_lasts",
bottle_lasts_unit = NULL,
preparation_dose = NULL,
preparation_unit = NULL,
timeperiod = "4 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_brand = NULL,
list_of_code_dose_unit = NULL,
list_of_code_bottle_size_unit = NULL,
list_of_code_bottle_lasts_unit = NULL,
list_preparation_dose_unit = NULL,
eqdose_covtab = table,
basis_strength_unit = NULL))
})
###############################################################################
###############################################################################
context("testing microcosting tablets when data being long format")
test_that("testing microcosting tablets when data being long format", {
med_costs_file <- system.file("extdata", "average_unit_costs_med_brand.csv",
package = "packDAMipd")
data_file <- system.file("extdata", "medication_all.xlsx",
package = "packDAMipd")
ind_part_data <- load_trial_data(data_file)
med_costs <- load_trial_data(med_costs_file)
conv_file <- system.file("extdata", "Med_calc.xlsx",
package = "packDAMipd")
table <- load_trial_data(conv_file)
names <- colnames(ind_part_data)
ending <- length(names)
ind_part_data_long <- tidyr::gather(ind_part_data, measurement, value,
names[2]:names[ending], factor_key = TRUE)
the_columns <- c("measurement", "value")
res <- microcosting_tablets_long(the_columns,
ind_part_data_long = ind_part_data_long,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg")
index <- which(res$measurment == "totmed_period_tablets")[1]
expect_equal(as.numeric(res$value[index]), 608.57, tolerance = 1e-3)
expect_error(microcosting_tablets_long(the_columns,
ind_part_data_long = NULL,
name_med = "tab_name",
brand_med = "tab_brand",
dose_med = "tab_strength",
unit_med = "tab_str_unit",
no_taken = "tab_no_taken",
freq_taken = "tab_frequency",
timeperiod = "2 months",
unit_cost_data = med_costs,
unit_cost_column = "UnitCost",
cost_calculated_per = "Basis",
strength_column = "Strength",
list_of_code_names = NULL,
list_of_code_freq = NULL,
list_of_code_dose_unit = NULL,
eqdose_cov_tab = table,
basis_strength_unit = "mg"))
})
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