Files in pafr
Read, Manipulate and Visualize 'Pairwise mApping Format' Data

MD5

LICENSE

NAMESPACE

DESCRIPTION

README.md tests/testthat.R tests/testthat/test_syn_plot.r

tests/testthat/tagless.paf

tests/testthat/test_plot.r tests/testthat/test_IO.r tests/testthat/test_manipulation.r tests/testthat/test_cov_plot.r

tests/testthat/test_I.bed

tests/testthat/bad_I.bed

tests/testthat/test_T.bed

tests/testthat/helper_load_ali.r

tests/testthat/all_inverted.paf

tests/testthat/test_ali.paf

tests/testthat/test_bed.r R/dotplot.R R/synteny.r R/scale.r R/coverage_plot.r R/IO.r R/filter_ali.r man/highlight_dotplot.Rd man/as_paf.Rd man/plot_synteny.Rd man/read_bed.Rd man/chrom_sizes.Rd man/filter_secondary_alignments.Rd man/theme_coverage_plot.Rd man/read_paf.Rd man/dotplot.Rd man/plot_coverage.Rd man/Gb_lab.Rd

man/figures/README-coverage-1.png

man/figures/README-len_distr-1.png

man/figures/README-dotplot-1.png

man/figures/README-synteny-1.png

inst/extdata/Q_centro.bed

inst/extdata/fungi.paf

inst/doc/Introduction_to_pafr.html

inst/doc/Introduction_to_pafr.R inst/doc/Introduction_to_pafr.Rmd

build/vignette.rds

vignettes/Introduction_to_pafr.Rmd

pafr documentation built on Dec. 8, 2020, 5:06 p.m.

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