plotOneWithValues: Plot the embedding of a 'Pagoda2' object with the given...

In pagoda2: Single Cell Analysis and Differential Expression

Plot the embedding of a 'Pagoda2' object with the given values

Description

Plot the embedding of a 'Pagoda2' object with the given values

Usage

plotOneWithValues(
  p2obj,
  values,
  title = "",
  type = "PCA",
  embeddingType = "tSNE"
)

Arguments

p2obj	the 'Pagoda2' object
values	the values to plot, fed into p2obj$plotEmbedding(colors=values)
title	character Title for the plot (default="")
type	character Type reduction on which the embedding is based on (default="PCA")
embeddingType	character Type of embedding to plot (default="tSNE")

Value

NULL, simply updates p2obj$plotEmbedding()

pagoda2 documentation built on June 24, 2024, 9:09 a.m.