read.10x.matrices: Quick loading of 10X CellRanger count matrices

In pagoda2: Single Cell Analysis and Differential Expression

Quick loading of 10X CellRanger count matrices

Description

Quick loading of 10X CellRanger count matrices

Usage

read.10x.matrices(matrixPaths, version = "V3", n.cores = 1, verbose = TRUE)

Arguments

matrixPaths	a single path to the folder containing matrix.mtx, genes.tsv and barcodes.tsv files, OR a named list of such paths
version	string Version of 10x output to read (default='V3'). Must be one of 'V2' or 'V3'.
n.cores	numeric Cores to utilize in parallel (default=1)
verbose	boolean Whether to output verbose output (default=TRUE)

Value

a sparse matrix representation of the data (or a list of sparse matrices if a list of paths was passed)

pagoda2 documentation built on June 24, 2024, 9:09 a.m.