read10xMatrix: This function reads a matrix generated by the 10x processing...

In pagoda2: Single Cell Analysis and Differential Expression

This function reads a matrix generated by the 10x processing pipeline from the specified directory and returns it. It aborts if one of the required files in the specified directory do not exist.

Description

This function reads a matrix generated by the 10x processing pipeline from the specified directory and returns it. It aborts if one of the required files in the specified directory do not exist.

Usage

read10xMatrix(path, version = "V3", transcript.id = "SYMBOL", verbose = TRUE)

Arguments

path	string Location of 10x output
version	string Version of 10x output to read (default='V3'). Must be one of 'V2' or 'V3'.
transcript.id	string Transcript identifier to use (default='SYMBOL'). Must be either 'SYMBOL' (e.g. "Sox17") or 'ENSEMBL' (e.g. "ENSMUSG00000025902"). This value is case-sensitive.
verbose	boolean Whether to return verbose output

Value

parsed 10x outputs into a matrix

pagoda2 documentation built on June 24, 2024, 9:09 a.m.