score.cells.puram: Puram, Bernstein (Cell, 2018) Score cells as described in...

In pagoda2: Single Cell Analysis and Differential Expression

Puram, Bernstein (Cell, 2018) Score cells as described in Puram, Bernstein (Cell, 2018)

Description

Puram, Bernstein (Cell, 2018) Score cells as described in Puram, Bernstein (Cell, 2018)

Usage

score.cells.puram(data, signature, correct = TRUE, show.plot = FALSE, ...)

Arguments

data	matrix of expression, rows are cell, columns are genes
signature	character vector The signature to evaluate, a character vector of genes
correct	boolean Perform background correction by getting a semi-random geneset (default=TRUE)
show.plot	boolean If corrected values are calculated show plot of corrected vs original scores (default=FALSE)
...	options for get.control.geneset()

Value

a score for each cell

pagoda2 documentation built on June 24, 2024, 9:09 a.m.