paramlink: Parametric Linkage Analysis in R

Parametric linkage analysis and other likelihood-based pedigree analyses based on the Elston-Stewart algorithm, including singlepoint LOD scores, power analysis and computation of marker genotype distributions. Multipoint analysis is provided through a convenient MERLIN wrapper. Includes many utility functions for creating, manipulating and plotting pedigrees, markers and linkage results.

AuthorMagnus Dehli Vigeland
Date of publication2016-10-17 00:37:57
MaintainerMagnus Dehli Vigeland <magnusdv@studmed.uio.no>
LicenseGPL (>= 2)
Version0.9-9

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Files in this package

paramlink
paramlink/NAMESPACE
paramlink/NEWS
paramlink/data
paramlink/data/twoloops.rda
paramlink/data/Xped.rda
paramlink/data/dominant.rda
paramlink/data/toyped.rda
paramlink/R
paramlink/R/modify.R paramlink/R/linkres.R paramlink/R/twoMarkerDistribution.R paramlink/R/utils.R paramlink/R/oneMarkerDistribution.R paramlink/R/subset.linkdat.R paramlink/R/linkage.power.R paramlink/R/likelihood_LINKAGE.R paramlink/R/plot.linkdat.R paramlink/R/SNPsim.R paramlink/R/as.data.frame.linkdat.R paramlink/R/markers.R paramlink/R/markerSim.R paramlink/R/merlin.R paramlink/R/likelihoodSNP.R paramlink/R/as.matrix.linkdat.R paramlink/R/print.linkdat.R paramlink/R/setModel.R paramlink/R/relationLR.R paramlink/R/setMap.R paramlink/R/randomPed.R paramlink/R/likelihood.R paramlink/R/linkdat.R paramlink/R/createPedigree.R paramlink/R/linkageSim.R paramlink/R/write.linkdat.R paramlink/R/lod.R paramlink/R/exclusionPower.R paramlink/R/examineKinships.R
paramlink/MD5
paramlink/DESCRIPTION
paramlink/man
paramlink/man/modify.Rd paramlink/man/linkageSim.Rd paramlink/man/markers.Rd paramlink/man/allGenotypes.Rd paramlink/man/plot.linkdat.Rd paramlink/man/markerSim.Rd paramlink/man/likelihood.Rd paramlink/man/merlin.Rd paramlink/man/examineKinships.Rd paramlink/man/inbreeding.Rd paramlink/man/relationLR.Rd paramlink/man/oneMarkerDistribution.Rd paramlink/man/lod.Rd paramlink/man/setModel.Rd paramlink/man/paramlink-package.Rd paramlink/man/mergePed.Rd paramlink/man/randomPed.Rd paramlink/man/createPedigree.Rd paramlink/man/dominant.Rd paramlink/man/lod.peaks.Rd paramlink/man/setAvailable.Rd paramlink/man/linkres.Rd paramlink/man/as.data.frame.linkdat.Rd paramlink/man/linkdat.utils.Rd paramlink/man/twoMarkerDistribution.Rd paramlink/man/readDatfile.Rd paramlink/man/exclusionPower.Rd paramlink/man/as.matrix.linkdat.Rd paramlink/man/linkdat.Rd paramlink/man/twoloops.Rd paramlink/man/Xped.Rd paramlink/man/toyped.Rd paramlink/man/linkage.power.Rd paramlink/man/simpleSim.Rd

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