Man pages for paramlink
Parametric Linkage and Other Pedigree Analysis in R
| allGenotypes | Genotype combinations |
| as.data.frame.linkdat | linkdat to data.frame conversion |
| as.matrix.linkdat | linkdat to matrix conversion |
| dominant | Example pedigree for linkage analysis |
| examineKinships | Check pedigree for relationship errors |
| exclusionPower | Power of exclusion |
| Familias2linkdat | Convert 'Familias' output to linkdat objects |
| hasCA | Pairwise common ancestors |
| IBDestimate | Relatedness estimation |
| IBDtriangle | IBD triangle plot |
| is.linkdat | Is an object a linkdat object? |
| likelihood | Pedigree likelihood |
| linkage.power | Power of a linkage study |
| linkageSim | Simulate markers linked to a disease locus. |
| linkdat | Linkdat objects |
| linkres | S3 methods for class 'linkres'. |
| lod | Two-point LOD score |
| lod.peaks | LOD score peaks |
| LR | Likelihood ratios of pedigree hypotheses |
| markers | Marker functions |
| markerSim | Marker simulation |
| mendelianCheck | Check for Mendelian errors |
| mergePed | Merge two pedigrees |
| merlin | MERLIN wrappers |
| oneMarkerDistribution | Genotype probability distribution |
| paramlink-package | paramlink: Parametric Linkage and Other Pedigree Analysis in... |
| pedCreate | Create simple pedigrees |
| pedigreeLoops | Pedigree loops |
| pedModify | Modify the pedigree of 'linkdat' objects |
| pedParts | Pedigree subsets |
| plot.linkdat | Plot pedigrees with genotypes |
| plotPedList | Plot a list of pedigrees. |
| randomPed | Random pedigree |
| readDatfile | Read dat file in LINKAGE format |
| relatednessCoeff | Relatedness coefficients |
| relationLR | Relationship Likelihood Ratio |
| setAvailable | Functions for modifying availability vectors |
| setModel | Set, change or display the model parameters for 'linkdat'... |
| setPlotLabels | Attach plot labels to a linkdat object |
| showInTriangle | Add points to the IBD triangle |
| simpleSim | Unconditional marker simulation |
| toyped | Toy pedigree for linkage analysis |
| transferMarkerdata | Transfer marker data |
| twoloops | A consanguineous pedigree |
| twoMarkerDistribution | Genotype probability distribution |
| Xped | Example pedigree with X-linked disease pattern. |
