R/pastis-package.R

In pastis: Phylogenetic Assembly with Soft Taxonomic Inferences

#' Phylogenetic Assembly with Soft Taxonomic Inferences.
#'
#' \tabular{ll}{
#' Package: \tab pastis\cr
#' Type: \tab Package\cr
#' Version: \tab 0.1-2\cr
#' Date: \tab 2013-9-11\cr
#' Depends: \tab caper (>= 0.5.0), ape (>= 3.0.0)\cr
#' Encoding: \tab UTF-8\cr
#' License: \tab GPL (>= 3)\cr
#' LazyLoad: \tab yes\cr
#' URL: \tab http://cran.r-project.org/web/packages/pastis/
#' }
#'
#' A pre-processor for mrBayes that assimilates sequences, taxonomic information and tree constraints. 
#' The main functions of interest for most users will be pastis_simple, pastis_main and conch. The main analysis is conducted
#' with pastis_simple or pastis_main followed by a manual execution of mrBayes (>3.2). The placement of taxa not contained in the
#' tree constraint can be investigated using conch.
#'
#' @aliases pastis-package pastis
#' @name pastis-package
#' @docType package
#' @title Phylogenetic Assembly with Soft Taxonomic Inferences.
#' @author Klaas Hartmann \email{klaas.hartmann@@utas.edu.au} Gavin Thomas \email{gavin.thomas@@sheffield.ac.uk} 
#' @keywords package
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