dot-score_subnetwork: Score a subnetwork from its size and z-score sum
In pathfindR: Enrichment Analysis Utilizing Active Subnetworks
.score_subnetwork R Documentation
Score a subnetwork from its size and z-score sum
Description
Single-node subnetworks always score 0. Otherwise the raw score is
zsum / sqrt(n), optionally calibrated against the Monte-Carlo
distribution and optionally penalized for size.
Usage
.score_subnetwork(sc, n, zsum, normalize)
Arguments
sc
A score context from build_score_context().
n
Number of nodes in the subnetwork.
zsum
Sum of the z-scores of the subnetwork nodes.
normalize
Logical; whether to calibrate the score.
Value
A numeric score.
pathfindR documentation built on July 2, 2026, 1:06 a.m.
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| .score_subnetwork | R Documentation |
Score a subnetwork from its size and z-score sum
Description
Single-node subnetworks always score 0. Otherwise the raw score is
zsum / sqrt(n), optionally calibrated against the Monte-Carlo
distribution and optionally penalized for size.
Usage
.score_subnetwork(sc, n, zsum, normalize)
Arguments
sc |
A score context from |
n |
Number of nodes in the subnetwork. |
zsum |
Sum of the z-scores of the subnetwork nodes. |
normalize |
Logical; whether to calibrate the score. |
Value
A numeric score.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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