API for pathfindR
Enrichment Analysis Utilizing Active Subnetworks

Global functions
.onAttach Source code
GO_all_terms_df Man page
RA_clustered Man page
RA_exp_mat Man page
RA_input Man page
RA_output Man page
active_snw_search Man page Source code
annotate_term_genes Man page Source code
biocarta_descriptions Man page
biocarta_genes Man page
biogrid_adj_list Man page
check_java_version Man page Source code
cluster_enriched_terms Man page Source code
cluster_graph_vis Man page Source code
color_kegg_pathway Man page Source code
create_kappa_matrix Man page Source code
custom_result Man page
enrichment Man page Source code
enrichment_analyses Man page Source code
enrichment_chart Man page Source code
example_active_snws Man page
fetch_gene_set Man page Source code
fetch_java_version Man page Source code
filterActiveSnws Man page Source code
fuzzy_term_clustering Man page Source code
genemania_adj_list Man page
go_all_genes Man page
hierarchical_term_clustering Man page Source code
hyperg_test Man page Source code
input_processing Man page Source code
input_testing Man page Source code
intact_adj_list Man page
kegg_adj_list Man page
kegg_descriptions Man page
kegg_genes Man page
mmu_kegg_descriptions Man page
mmu_kegg_genes Man page
mmu_string_adj_list Man page
myeloma_input Man page
myeloma_output Man page
pathfindR Man page
plot_scores Man page Source code
reactome_descriptions Man page
reactome_genes Man page
return_pin_path Man page Source code
run_pathfindR Man page Source code
score_terms Man page Source code
string_adj_list Man page
summarize_enrichment_results Man page Source code
term_gene_graph Man page Source code
visualize_hsa_KEGG Man page Source code
visualize_term_interactions Man page Source code
visualize_terms Man page Source code
pathfindR documentation built on Dec. 6, 2019, 5:13 p.m.