rare_curve_species: Rare the species

In pctax: Professional Comprehensive Omics Data Analysis

Rare the species

Description

Rare the species

Usage

rare_curve_species(
  otutab,
  step = 2000,
  method = "richness",
  mode = 2,
  reps = 3,
  threads = 1,
  verbose = TRUE
)

Arguments

otutab	otutab
step	default 2000
method	one of "richness","chao1","ace","gc","shannon","simpson","pd","pielou"
mode	1 for little table, 2 for big
reps	reps
threads	use how many threads to calculate (default:1)
verbose	verbose

Value

ggplot

Examples

data(otutab, package = "pcutils")
a <- rare_curve_species(otutab, mode = 1)
plot(a)

pctax documentation built on May 29, 2024, 10:03 a.m.