volcano_p: Volcano plot for difference analysis

In pctax: Professional Comprehensive Omics Data Analysis

Volcano plot for difference analysis

Description

Volcano plot for difference analysis

Usage

volcano_p(
  res,
  logfc = 1,
  adjp = 0.05,
  text = TRUE,
  repel = TRUE,
  mode = 1,
  number = FALSE
)

Arguments

res	result of diff_da which have colnames: tax, log2FoldChange, padj, compare, sig
logfc	log_fold_change threshold
adjp	adjust_p_value threshold
text	text, TRUE
repel	repel, TRUE
mode	1:normal; 2:multi_contrast
number	show the tax number

Value

ggplot

See Also

diff_da

pctax documentation built on May 29, 2024, 10:03 a.m.