outputAnnotationDiagnostic-peakPantheRAnnotation-method: Save to disk the annotation parameters as CSV and a...

In peakPantheR: Peak Picking and Annotation of High Resolution Experiments

Description

Save to disk the annotation parameters as CSV and a diagnostic plot per fitted compound Save to disk the annotation parameters as CSV (as generated by outputAnnotationParamsCSV()) and a diagnostic plot per fitted compound (as generated by annotationDiagnosticMultiplot()) if savePlots is TRUE

Usage

## S4 method for signature 'peakPantheRAnnotation'
outputAnnotationDiagnostic(object, saveFolder,
  savePlots = TRUE, sampleColour = NULL, verbose = TRUE, ...)

Arguments

object	(peakPantheRAnnotation) Annotated peakPantheRAnnotation object
saveFolder	(str) Path of folder where annotationParameters_summary.csv and plots will be saved
savePlots	(bool) If TRUE save a diagnostic plot for each compound
sampleColour	(str) NULL or vector colour for each sample
verbose	(bool) If TRUE message progress
...	Additional parameters for plotting i.e. sampling for the number of points to employ when plotting fittedCurve

Value

None

peakPantheR documentation built on May 1, 2019, 10:53 p.m.