outputAnnotationResult-peakPantheRAnnotation-method: Save to disk all annotation results as csv files Save to disk...
In peakPantheR: Peak Picking and Annotation of High Resolution Experiments
Description
Usage
Arguments
Value
Description
Save to disk all annotation results as csv files
Save to disk all annotation results as annotationName_ ... .csv files: compound metadata (cpdMetadata, cpdID, cpdName) and spectra metadata (spectraMetadata, acquisitionTime, TIC), summary of fit (ratio of peaks found: ratio_peaks_found, ratio of peaks filled: ratio_peaks_filled, mean ppm_error: ppm_error, mean rt_dev_sec: rt_dev_sec), and a file for each column of peakTables (with samples as rows and compounds as columns)
Usage
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## S4 method for signature 'peakPantheRAnnotation'
outputAnnotationResult(object, saveFolder,
annotationName = "annotationResult", verbose = TRUE)
Arguments
object
(peakPantheRAnnotation) Annotated peakPantheRAnnotation object
saveFolder
(str) Path of folder where the annotation result csv will be saved
annotationName
(str) name of annotation to use in the saved csv
verbose
(bool) If TRUE message progress
Value
None
peakPantheR documentation built on May 1, 2019, 10:53 p.m.
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Description Usage Arguments Value
Description
Save to disk all annotation results as csv files
Save to disk all annotation results as annotationName_ ... .csv files: compound metadata (cpdMetadata, cpdID, cpdName) and spectra metadata (spectraMetadata, acquisitionTime, TIC), summary of fit (ratio of peaks found: ratio_peaks_found, ratio of peaks filled: ratio_peaks_filled, mean ppm_error: ppm_error, mean rt_dev_sec: rt_dev_sec), and a file for each column of peakTables (with samples as rows and compounds as columns)
Usage
1 2 3 | ## S4 method for signature 'peakPantheRAnnotation'
outputAnnotationResult(object, saveFolder,
annotationName = "annotationResult", verbose = TRUE)
|
Arguments
object |
(peakPantheRAnnotation) Annotated peakPantheRAnnotation object |
saveFolder |
(str) Path of folder where the annotation result csv will be saved |
annotationName |
(str) name of annotation to use in the saved csv |
verbose |
(bool) If TRUE message progress |
Value
None
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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