saveSingleFileMultiEIC: Save to disk a plot of all ROI EIC and detected feature range

In peakPantheR: Peak Picking and Annotation of High Resolution Experiments

Description

Plot and save a .png of all ROI (x is RT, y is intensity), with the matching detected peak rt and peakwidth under it.

Usage

saveSingleFileMultiEIC(ROIsDataPoint, curveFit, foundPeakTable, savePath,
  width = 15, height = 15, verbose = TRUE)

Arguments

ROIsDataPoint	(list) a list of data.frame of raw data points for each ROI (retention time "rt", mass "mz" and intensity "int" (as column) of each raw data points (as row)).
curveFit	(list) a list of peakPantheR_curveFit or NA for each ROI
foundPeakTable	(data.frame) data.frame as generated by findTargetFeatures, with features as rows and peak properties as columns. The following columns are mandatory: cpdID, cpdName, rt, rtmin, rtmax, mzmin, mzmax.
savePath	(str) Full path to save a .png of all ROI EICs , expect 'filepath/filename.png'.
width	(float) Width in cm for a single ROI plot (if more than one plot in total, 2 columns will be used). dpi set to a 100.
height	(float) height in a cm for a single ROI plot. dpi set to 100
verbose	(bool) if TRUE message progress

Value

None

peakPantheR documentation built on May 1, 2019, 10:53 p.m.