write.pml: Export pml objects
In phangorn: Phylogenetic Reconstruction and Analysis
write.pml R Documentation
Export pml objects
Description
write.pml writes out the ML tree and the model parameters.
Usage
write.pml(x, file = tempfile(), ...)
Arguments
x
an object of class ancestral.
file
a file name. File endings are added.
...
Further arguments passed to or from other methods.
Value
write.pml returns the input x invisibly.
See Also
ancestral.pml, plotAnc
Examples
data(woodmouse)
fit <- pml_bb(woodmouse, "JC", rearrangement = "none")
write.pml(fit, "woodmouse")
unlink(c("woodmouse_pml.txt", "woodmouse_tree.nwk"))
phangorn documentation built on Sept. 17, 2024, 5:08 p.m.
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| write.pml | R Documentation |
Export pml objects
Description
write.pml writes out the ML tree and the model parameters.
Usage
write.pml(x, file = tempfile(), ...)
Arguments
x |
an object of class ancestral. |
file |
a file name. File endings are added. |
... |
Further arguments passed to or from other methods. |
Value
write.pml returns the input x invisibly.
See Also
ancestral.pml, plotAnc
Examples
data(woodmouse)
fit <- pml_bb(woodmouse, "JC", rearrangement = "none")
write.pml(fit, "woodmouse")
unlink(c("woodmouse_pml.txt", "woodmouse_tree.nwk"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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