PSRoot: The root class for all phylosim objects
In phylosim: Flexible Simulations of Biological Sequence Evolution

Description Usage Arguments Fields and Methods Author(s) See Also Examples

The root class for all phylosim objects containig some utility methods. Package:
Class PSRoot

Object
~~|
~~+--PSRoot

Directly known subclasses:
Alphabet, AminoAcidAlphabet, AminoAcidSequence, AminoAcidSubst, AnyAlphabet, BinaryAlphabet, BinarySequence, BinarySubst, BrownianInsertor, CodonAlphabet, CodonSequence, CodonSubst, CodonUNREST, ContinuousDeletor, ContinuousInsertor, DiscreteDeletor, DiscreteInsertor, ECMrest, ECMunrest, Event, F81, F84, FastFieldDeletor, GTR, GY94, GeneralDeletor, GeneralInDel, GeneralInsertor, GeneralSubstitution, HKY, JC69, JTT, JTT.dcmut, K80, K81, LG, MtZoa, NucleotideAlphabet, NucleotideSequence, PAM, PAM.dcmut, PhyloSim, Process, QMatrix, Sequence, Site, T92, TN93, ToleranceSubstitution, UNREST, WAG, cpREV, mtArt, mtMam, mtREV24

public static class PSRoot
extends Object

1	PSRoot(...)

...

Not used.

Methods:

	`checkConsistency`	-
	`enableVirtual`	-
	`getComments`	-
	`getMethodsList`	-
	`globalConsistencyCheck`	-
	`intersect.list`	-
	`is`	-
	`is.na`	-
	`ll`	-
	`my.all.equal`	-
	`plot`	-
	`setComments`	-
	`setMethodsList`	-
	`summary`	-
	`virtualAssignmentForbidden`	-

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save

Botond Sipos, Gregory Jordan

Object