clone.ToleranceSubstitution: Clone a ToleranceSubstitution object

In phylosim: Flexible Simulations of Biological Sequence Evolution

Description

Clone a ToleranceSubstitution object.

This method also clones the aggregated QMatrix object, but not the aggregated Alphabet object, as that is a good target for recycling.

Usage

## S3 method for class 'ToleranceSubstitution'
clone(this, ...)

Arguments

this	A ToleranceSubstitution object.
...	Not used.

Value

A ToleranceSubstitution object.

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see ToleranceSubstitution.

Examples

	# create a ToleranceSubstitution object
	p<-ToleranceSubstitution(
                           alphabet=BinaryAlphabet(),
                           rate.list=list("0->1"=1,"1->0"=2),
                           name="MyBinary"
                           )
	# clone p
	pp<-clone(p)
	# do some checks
	p;pp
	p == p
	p == pp
	equals(p$qMatrix, pp$qMatrix)
 

phylosim documentation built on Nov. 22, 2019, 1:07 a.m.