getAlignmentLength.PhyloSim: Get the alignment length from a PhyloSim object

In phylosim: Flexible Simulations of Biological Sequence Evolution

Description

Get the alignment length from a PhyloSim object.

This method retruns the number of columns in the alignment stored in the PhyloSim object.

Usage

## S3 method for class 'PhyloSim'
getAlignmentLength(this, ...)

Arguments

this	A PhyloSim object.
...	Not used.

Value

A numeric vector of length one.

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see PhyloSim.

Examples

	# create a PhyloSim object and run a simulation:
	sim<-Simulate(
                     PhyloSim(phy=rcoal(3),
                     root=NucleotideSequence(string="ATGC", proc=list(list(JC69())) ) )
             )
	# get the alignment length
	getAlignmentLength(sim)
 

phylosim documentation built on Nov. 22, 2019, 1:07 a.m.