getBaseFreqs.K80: Get the base frequency parameters

In phylosim: Flexible Simulations of Biological Sequence Evolution

Description

Get the base frequency parameters.

The order of the frequency parameters must match with the order of symbols in the NucleotideAlphabet objects. The K80 model has equal base frequencies.

Usage

## S3 method for class 'K80'
getBaseFreqs(this, ...)

Arguments

this	A K80 object.
...	Not used.

Value

A matrix containing the base frequency parameters.

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see K80.

Examples

	# construct object
	p<-K80()
	# get base frequency parameters
	getBaseFreqs(p) # uniform
	# set/get base frequency parameters via virtual field
	p$baseFreqs # uniform
 

phylosim documentation built on Nov. 22, 2019, 1:07 a.m.