getRateParamList.GTR: Get the rate parameters
In phylosim: Flexible Simulations of Biological Sequence Evolution

Description Usage Arguments Value Author(s) See Also Examples

Get the rate parameters.

The rate parameters are named as in PAML (see PAML documentation: http://bit.ly/9SQK2f).

1 2	## S3 method for class 'GTR' getRateParamList(this, ...)

`this`	A GTR object.
`...`	Not used.

A list of rate parameters.

Botond Sipos, Gregory Jordan

For more information see GTR.

	# create GTR object
	p<-GTR()
	# set/get rate parameters
	setRateParamList(p,list(
                       "a"=1, "b"=2, "c"=3,
                       "d"=1, "e"=2, "f"=3
        ))
	getRateParamList(p)
	# set/get rate parameters via virtual field
	p$rateParamList<-list(
                       "a"=4, "b"=1, "c"=4,
                       "d"=1, "e"=4, "f"=1
        )
	p$rateParamList
	# get object summary
	summary(p)