getRootSeq.PhyloSim: Get the root sequence aggregated by a PhyloSim object
In phylosim: Flexible Simulations of Biological Sequence Evolution

Description Usage Arguments Value Author(s) See Also Examples

Get the root sequence aggregated by a PhyloSim object.

1 2	## S3 method for class 'PhyloSim' getRootSeq(this, ...)

`this`	A PhyloSim object.
`...`	Not used.

The root Sequence object or NA.

Botond Sipos, Gregory Jordan

For more information see PhyloSim. Sequence Process

	# create some objects
	sim<-PhyloSim(phylo=rcoal(3));
	seq<-NucleotideSequence(string="ATGCC");
	# set/get root sequence
	setRootSeq(sim, seq);
	getRootSeq(sim, seq);
	# set/get root sequence via virtual field
	sim$rootSeq<-BinarySequence(string="111000111000");
	sim$rootSeq;