getString.Sequence: Get the string representation of a Sequence object

In phylosim: Flexible Simulations of Biological Sequence Evolution

Description

Get the string representation of a Sequence object. The string representation is the concatenation of the states of the aggregated Site object. Undefined states (NA-s) are represented by question marks.

Usage

## S3 method for class 'Sequence'
getString(this, ...)

Arguments

this	A Sequence object.
...	Not used.

Value

A character vector of length one.

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see Sequence.

Examples

	# create object
	s<-Sequence(length=10)
	# get character representation
	getString(s)	# a bunch of '?'-s
	# get string reperesentation via virtual field
	s$string
 

phylosim documentation built on Nov. 22, 2019, 1:07 a.m.